Jatropha Genome Database

JcCA0154411.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.30 + phase: 0 /partial/short
         (48 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g105940.1 Light chain 3 (LC3) chr08_pseudomolecule_IM...    80   2e-16
IMGA|Medtr2g104190.1 Light chain 3 (LC3) chr02_pseudomolecule_IM...    55   6e-09
IMGA|Medtr8g134240.1 Light chain 3 (LC3) chr08_pseudomolecule_IM...    54   2e-08
IMGA|Medtr1g106030.1 Light chain 3 (LC3) chr01_pseudomolecule_IM...    48   1e-06

>IMGA|Medtr8g105940.1 Light chain 3 (LC3)
          chr08_pseudomolecule_IMGAG_V3 23520062-23522856 E
          EGN_Mt090430 20090702
          Length = 122

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 44/48 (91%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKS FK EH LE+R+AE+ARIREKYPDRIPVIVE+AERSDIP IDKK
Sbjct: 1  MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKK 48


>IMGA|Medtr2g104190.1 Light chain 3 (LC3)
          chr02_pseudomolecule_IMGAG_V3 24505007-24508014 E
          EGN_Mt090430 20090702
          Length = 112

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 35/48 (72%), Gaps = 8/48 (16%)

Query: 1  MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          MAKSSFKLEHPL R    S  I      RIPVIVERAE+SD+PDIDKK
Sbjct: 1  MAKSSFKLEHPLGR----SIPIEF----RIPVIVERAEKSDVPDIDKK 40


>IMGA|Medtr8g134240.1 Light chain 3 (LC3)
          chr08_pseudomolecule_IMGAG_V3 32243783-32246370 E
          EGN_Mt090430 20090702
          Length = 118

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 4  SSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
          +SFK E  L+ R+ ES  I  KYPDRIPVI+E+  R+D+P++DKK
Sbjct: 5  NSFKQEFSLDERRKESQSIIVKYPDRIPVIIEKYSRTDLPELDKK 49


>IMGA|Medtr1g106030.1 Light chain 3 (LC3)
          chr01_pseudomolecule_IMGAG_V3 21999606-22000729 F
          EGN_Mt090430 20090702
          Length = 121

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%)

Query: 2  AKSSFKLEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKK 48
            S F+ E   E+R  ES  I  KYPDRIPVIVE+  + D+P ++KK
Sbjct: 3  GGSYFQNEFTFEQRLEESRDIIAKYPDRIPVIVEKYTKCDLPHLEKK 49