Jatropha Genome Database

JcCA0154411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.20 + phase: 0 
         (172 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g086570.1 Protein of unknown function DUF588 chr03_ps...   109   5e-25
IMGA|Medtr5g084410.1 Protein of unknown function DUF588 chr05_ps...   103   5e-23
IMGA|Medtr2g030530.1 Protein of unknown function DUF588 chr02_ps...    62   2e-10
IMGA|Medtr8g128600.1 Plant integral membrane protein chr08_pseud...    57   5e-09

>IMGA|Medtr3g086570.1 Protein of unknown function DUF588
           chr03_pseudomolecule_IMGAG_V3 20271934-20268083 E
           EGN_Mt090430 20090702
          Length = 216

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 2/168 (1%)

Query: 4   LLKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGACYAF 63
            L+  ++ LR   I L VA++ L++ N +EN  YG + Y++L   +Y+V  + I A Y+ 
Sbjct: 40  FLRTAETFLRLLPIGLCVAALVLMLKNSEEND-YGSVSYNDLGAFRYLVHANGICAGYSL 98

Query: 64  -SAVACTWIRSLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEACNSF 122
            SAV     R  + + W FF  DQ++ Y+ +++ A+ ME+VYLA NGD    W+ AC SF
Sbjct: 99  LSAVVVAAPRPTLLRAWTFFFLDQVLTYIILSAGASSMEVVYLAENGDSATVWNSACGSF 158

Query: 123 GKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPPVSSKQVEGN 170
           G+FCHK+                   IS+++ FS ++ P S     GN
Sbjct: 159 GQFCHKVTASVAITFVALFCYVILSLISSFKLFSNYDVPASCPNTTGN 206


>IMGA|Medtr5g084410.1 Protein of unknown function DUF588
           chr05_pseudomolecule_IMGAG_V3 32129516-32127441 E
           EGN_Mt090430 20090702
          Length = 209

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)

Query: 2   APLLKLLDSSLRFSVIPLSVASICLIVTNQQENSSYGDLKYSNLMGLKYMVCISAIGACY 61
           A LL+++++ LR   I L V ++ +++ N +EN  YG + YS+L   +Y+V  + I A Y
Sbjct: 31  ASLLRIVETFLRLFPICLCVTALIIMLKNSEENE-YGSVAYSDLGAFRYLVHANGICAGY 89

Query: 62  A-FSAVACTWIR-SLVNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWSEAC 119
           + FSAV     R S + K W FF+ DQ+  Y+ + + A L E++YLA  G     WS AC
Sbjct: 90  SLFSAVIVAVPRPSTMPKAWAFFLLDQVQTYIILAAGAVLTEVLYLAEYGVPTAGWSSAC 149

Query: 120 NSFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPP 161
            SFG FCHK+K                  IS+YR FS ++ P
Sbjct: 150 GSFGSFCHKIKASLVITFIAVVCYILLSLISSYRLFSKYDAP 191


>IMGA|Medtr2g030530.1 Protein of unknown function DUF588
           chr02_pseudomolecule_IMGAG_V3 8511168-8513670 F
           EGN_Mt090430 20090702
          Length = 201

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 5   LKLLDSSLRFSVIPLSVASICLIVTNQQENSSY---GDLKYSNLMGLKYMVCISAIGACY 61
           +++ +  LRF  + L V ++ LIVT+ Q    +      K++++  L ++V  +AI A Y
Sbjct: 28  VRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKALVFLVVANAIAAGY 87

Query: 62  AF-SAVAC--TWIRS--LVNK--VWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVT 114
           +    + C  + I+   L NK   W  F  DQ+MAY+TV + +A  +    A  G +++ 
Sbjct: 88  SLIQGLRCVVSMIKGSVLFNKPLAWAIFSCDQVMAYITVAAVSAAAQSAVFAKMGQEQLQ 147

Query: 115 WSEACNSFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVF 158
           W + CN +GKFC+++                   ISA+  F ++
Sbjct: 148 WMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLY 191


>IMGA|Medtr8g128600.1 Plant integral membrane protein
           chr08_pseudomolecule_IMGAG_V3 30129493-30128523 E
           EGN_Mt090430 20090702
          Length = 184

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 12  LRFSVIPLSVASICLIVTNQQENSSYGDLK----YSNLMGLKYMVCISAIGACY------ 61
           LR S I   V++ C++  + +       +K    Y +L  LK ++ +++  A Y      
Sbjct: 12  LRVSAILFLVSTACIVAFDTETKVVILMIKKKATYKDLDALKILLYVTSAAAGYNMLQLC 71

Query: 62  AFSAVACTWIRSL-----VNKVWLFFVSDQIMAYLTVTSAAALMEIVYLAYNGDQEVTWS 116
             S  AC+ IR+      ++  W+ F+ DQI+ YLT  +  +  E    A  G +   W 
Sbjct: 72  KHSFSACSTIRNFNDSYYMHMAWISFLLDQIVVYLTFATNTSAFEACLFALTGSEAFQWM 131

Query: 117 EACNSFGKFCHKMKXXXXXXXXXXXXXXXXXXISAYRAFSVFEPP 161
           + CN F +FC+++                   ISAY+   ++ P 
Sbjct: 132 KVCNKFTRFCYQIGGAILCCYIASILMAMISTISAYKVLRMYSPK 176