Jatropha Genome Database

JcCA0154181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.20 - phase: 0 
         (567 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g078770.1 WD40-like chr05_pseudomolecule_IMGAG_V3 291...   779   0.0  

>IMGA|Medtr5g078770.1 WD40-like chr05_pseudomolecule_IMGAG_V3
           29181562-29186614 E EGN_Mt090430 20090702
          Length = 571

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/463 (77%), Positives = 413/463 (89%), Gaps = 13/463 (2%)

Query: 68  SKKKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPG----------- 116
           + +KGK PIT++L+KVCKVCKKPGHEAGFKGATYIDCPMKPCFLCK PG           
Sbjct: 61  ANRKGKTPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKTPGKLNINIPYIVC 120

Query: 117 --HTTITCPHRVATEYGVIPAPQRNTHNPLEYVFQRQLRPHIPPIKPPFVVPDQVCCAVI 174
             HTT+ CPHRV TE+GV+PAP+R T  PLEYVF+RQLR  IP IKP  V+PDQV CAVI
Sbjct: 121 IGHTTLNCPHRVTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPSIKPKCVIPDQVNCAVI 180

Query: 175 RYHSRRVTCLEFHPTKNNVLLSGDKKGQVGVWDFEKVHEKMVYGNIHTCIVNNMRFKPSN 234
           RYHSRR+T LEFHPTKNN+LLSGDKKGQ+GVWDFEKVHEK+VY + H+CI+NNM+F P+N
Sbjct: 181 RYHSRRITSLEFHPTKNNILLSGDKKGQLGVWDFEKVHEKVVYDDKHSCILNNMKFNPTN 240

Query: 235 DGTVYAASSDGTISCTDMETGISTSLMNLNPDGWQGPSSWRMLYGMDINSEKGVVLVADN 294
           D  VY+ASSDGTIS TD+ETG+S+SLMNLNPDGW GP++W+MLYGMDIN EKG+VLVADN
Sbjct: 241 DCMVYSASSDGTISYTDLETGMSSSLMNLNPDGWHGPNTWKMLYGMDINCEKGLVLVADN 300

Query: 295 FGFLYIVDMRSNSKTGQPILIHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWDMRRLEA 354
           FGFL++VDMRSN + G  +LIHKKGSKV G+HCNP+ P++LL+CGNDH+ARIWDMRRLEA
Sbjct: 301 FGFLHLVDMRSNHRNGDAVLIHKKGSKVTGIHCNPMQPDILLTCGNDHYARIWDMRRLEA 360

Query: 355 GSSLCDLVHKRVVNCAYFSPLSGSKILTTSQDNRLRVWDSIFGNLDSPSREIVHSHDFNR 414
           GSSLC L HKRVVN AYFSP++G+KILTTSQDNRLR+WDSIFGN+ SPSREIVHSHDFNR
Sbjct: 361 GSSLCSLEHKRVVNSAYFSPITGNKILTTSQDNRLRIWDSIFGNMASPSREIVHSHDFNR 420

Query: 415 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDTSNGQLVAEVMDPNITTIT 474
           HLTPF+AEWDPKDPSESLAVIGRYISEN+NG ALHPIDFIDTS GQLVAEVMDPNITTI+
Sbjct: 421 HLTPFKAEWDPKDPSESLAVIGRYISENFNGTALHPIDFIDTSTGQLVAEVMDPNITTIS 480

Query: 475 PVNKLHPRDDILASGSSRSLFIWKPKDKSELAEQKEDRQIVIC 517
           PVNKLHPRDDILA+GSSRSLFIWKPK+KSE+ E+K++ +IV+C
Sbjct: 481 PVNKLHPRDDILATGSSRSLFIWKPKEKSEMVEEKDESRIVVC 523