Jatropha Genome Database

JcCA0154181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.10 - phase: 0 /partial
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g078780.1 Probable pleiotropic drug resistance protei...    83   3e-17

>IMGA|Medtr5g078780.1 Probable pleiotropic drug resistance protein
          3, putative chr05_pseudomolecule_IMGAG_V3
          29190297-29193942 H EGN_Mt090430 20090702
          Length = 215

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 67/94 (71%), Gaps = 2/94 (2%)

Query: 3  AALNGTEYLEVQIDPGRESFARPSNADSVREDEAELQWQAIARLPSQKRSNFSLLRRSST 62
          AA +G+EY E+    G ESFAR SNA+ V EDE EL W A++RLPSQKR NF++LR SS+
Sbjct: 2  AASDGSEYFEIG-SIGSESFARASNAEWVEEDEEELHWAALSRLPSQKRINFAVLRASSS 60

Query: 63 DYSHGGEESRMEMIDVTKLDRANRELVVRKALAT 96
                E +   ++DV KL+R NRELVV+KALAT
Sbjct: 61 R-QPSKENAGENLVDVRKLNRFNRELVVKKALAT 93