Jatropha Genome Database

JcCA0154071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154071.20 - phase: 0 
         (189 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g129860.1 rRNA processing chr07_pseudomolecule_IMGAG_...   110   4e-25

>IMGA|Medtr7g129860.1 rRNA processing chr07_pseudomolecule_IMGAG_V3
           30182143-30178536 E EGN_Mt090430 20090702
          Length = 192

 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 92/182 (50%), Gaps = 2/182 (1%)

Query: 9   DEENKTKINSSASISMKK--KKNMMRLGGPALSLEAFANAKSTRNKYNPALIKKQREFYK 66
           DE + +  +    ++MKK  ++N+ RLGG  LSL AFANAKS  + YNP+LIKKQRE Y 
Sbjct: 6   DERSDSHEDKQKRLTMKKNKRRNVSRLGGSGLSLNAFANAKSNNSGYNPSLIKKQREIYN 65

Query: 67  NAKYVSKFKKKLRQQNQQTETSSVVTNLEDNNETGXXXXXXXXXXXXXXXXXXXXXXXXX 126
           NAK V K+KK L+QQN Q++ S    ++E+ NET                          
Sbjct: 66  NAKKVKKYKKMLKQQNHQSDPSVSQRHIENLNETEEDKDKNGRRRRKKDSAFSLEELYKK 125

Query: 127 QHXXXXXXXXXXXXFIXXXXXXXXXXXXXXXXXXXXMFKKTRHGQPVMKYRIEHLLQTIQ 186
           QH                                  MFKKTR GQP+MKYRIEHLL+TIQ
Sbjct: 126 QHEEKERERMEREAVFKEKKEQREKAEARRKSLREKMFKKTRKGQPIMKYRIEHLLETIQ 185

Query: 187 GS 188
           GS
Sbjct: 186 GS 187