Jatropha Genome Database

JcCA0154071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154071.10 + phase: 2 /partial
         (141 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g096650.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...   171   1e-43
IMGA|Medtr4g124940.1 Cyclin-like F-box chr04_pseudomolecule_IMGA...   154   2e-38
IMGA|Medtr5g074580.1 Leucine-rich repeat 2 chr05_pseudomolecule_...   118   1e-27
IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related ch...   115   5e-27
IMGA|Medtr5g089200.1 Leucine-rich repeat 2 chr05_pseudomolecule_...    71   2e-13
IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing su...    62   1e-10
IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing su...    60   4e-10

>IMGA|Medtr7g096650.1 Cyclin-like F-box
           chr07_pseudomolecule_IMGAG_V3 21663069-21659617 E
           EGN_Mt090430 20090702
          Length = 571

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/133 (61%), Positives = 101/133 (75%), Gaps = 1/133 (0%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D+VF YIG YA++LEMLS+AFAG+SD G+ +V++GC+ +RKLEIRDCPFGD ALL +  K
Sbjct: 439 DQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKIRKLEIRDCPFGDTALLTDIGK 498

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCP-VEKLYIYRTVA 119
            ETMRSLWMSSC V+  ACK L +KMPRLNVE+  E    D   E    VEK+Y+YRTVA
Sbjct: 499 YETMRSLWMSSCEVTVEACKTLAKKMPRLNVEIFSESEQADCYVEDGQRVEKMYLYRTVA 558

Query: 120 GPRFDMPGFVWTM 132
           G R D P +VWT+
Sbjct: 559 GKREDAPDYVWTL 571


>IMGA|Medtr4g124940.1 Cyclin-like F-box
           chr04_pseudomolecule_IMGAG_V3 29352485-29348732 F
           EGN_Mt090430 20090702
          Length = 586

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 91/132 (68%), Gaps = 5/132 (3%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D  FEYIG YAK LE LSVAFAG SD  +  V+ GC  LRKLEIRD PFG+ ALL+   K
Sbjct: 460 DLTFEYIGKYAKNLETLSVAFAGSSDWAMQCVLVGCPKLRKLEIRDSPFGNAALLSGFDK 519

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
            E+MRSLWMS C V+   C+LL Q+ PRLNVEV+ E G  DS+       KLY+YR+VAG
Sbjct: 520 YESMRSLWMSDCKVTMNGCRLLAQERPRLNVEVMQEEGGDDSQ-----AGKLYVYRSVAG 574

Query: 121 PRFDMPGFVWTM 132
           PR D P FV T+
Sbjct: 575 PRRDAPPFVLTL 586


>IMGA|Medtr5g074580.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 26963413-26966403 E
           EGN_Mt090430 20090702
          Length = 617

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 5/126 (3%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           DR FEYIG Y K +  LSVAFAGD+D  L +V+ GC NL+KLEIRD PFGD AL +    
Sbjct: 490 DRCFEYIGRYGKLIRTLSVAFAGDTDNSLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHH 549

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTVAG 120
              MR LWMSSC ++  AC+ + + +P++ +EVI+     +       +E LY+YR++ G
Sbjct: 550 YYNMRFLWMSSCKLTRQACQEVARALPQMVMEVIN-----NDVEAVNDIEILYMYRSLDG 604

Query: 121 PRFDMP 126
           PR D P
Sbjct: 605 PRDDAP 610


>IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related
           chr03_pseudomolecule_IMGAG_V3 38779268-38775322 E
           EGN_Mt090430 20090702
          Length = 594

 Score =  115 bits (289), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 9/135 (6%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAAK 60
           D  F YIG Y K +  LSVAFAGD+D GL +V+ GC NL+KLEIRD PFGD AL +    
Sbjct: 467 DLAFCYIGLYGKMIRTLSVAFAGDTDSGLKYVLDGCYNLQKLEIRDSPFGDGALRSGLHH 526

Query: 61  LETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVI--DERGPPDSRPESCPVEKLYIYRTV 118
              MR LWMSSC ++  AC+ + + +PRL +EVI  DE    D        + LY+YR++
Sbjct: 527 FYNMRFLWMSSCKLTRQACQEVARTLPRLVLEVINTDEDTVDD-------FDILYMYRSL 579

Query: 119 AGPRFDMPGFVWTMD 133
             PR D P  V  ++
Sbjct: 580 DKPRSDAPKVVTILN 594


>IMGA|Medtr5g089200.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 34621888-34616774 E
           EGN_Mt090430 20090702
          Length = 587

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 6   YIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCP-FGDKALLANAAKLETM 64
           YIG Y+  +  + + + G++D GL     GC +L+KLE+R C  F + AL   A +L ++
Sbjct: 443 YIGKYSPNVRWILLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEHALAVAATRLTSL 502

Query: 65  RSLWMSSCSVSYGACKLLGQKMPRLNVEVIDER-----GPPDSRPESC--PVEKLYIYRT 117
           R LW+     S     LL    P  N+EVI  R        D RP     P   L  Y +
Sbjct: 503 RYLWVQGYGASASGHDLLAMARPYWNIEVIPSRRMVVNNQQDRRPVVIEHPAHIL-AYYS 561

Query: 118 VAGPRFDMPGFV 129
           +AGPR D P  V
Sbjct: 562 LAGPRADCPDTV 573


>IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing
           subtype chr08_pseudomolecule_IMGAG_V3 14712347-14710032
           H EGN_Mt090430 20090702
          Length = 557

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 1   DRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCPFGDKALLANAA- 59
           D+  EYIG +   L+ + + + G +D GL     GC +L+KLEIR C F  + +L  AA 
Sbjct: 425 DKDLEYIGRFGVNLKWILLGYCGQTDKGLLDFSQGCRSLQKLEIRGCKFFSEVVLGVAAY 484

Query: 60  KLETMRSLWMSSCSVSY-GACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTV 118
            L+++R LW+ S S S+           P    E+I      D+       + L  Y  +
Sbjct: 485 NLKSLRYLWVQSYSPSFPPGSGFRFSARPYWFTEMISTSQDEDNN------QFLGYYSIL 538

Query: 119 AGPRFDMP 126
            GPR D+P
Sbjct: 539 GGPRADIP 546


>IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing
           subtype chr03_pseudomolecule_IMGAG_V3 22073407-22070105
           E EGN_Mt090430 20090702
          Length = 601

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 10/133 (7%)

Query: 6   YIGTYAKKLEMLSVAFAGDSDLGLHHVMSGCENLRKLEIRDCP-FGDKALLANAAKLETM 64
           YIG +++ +  + + + G++D GL    +GC +L+KLE+R C  F + AL   A +L ++
Sbjct: 459 YIGQHSQNVRWMLLGYVGETDTGLLEFSNGCPSLQKLEMRGCSFFSEHALAIAATRLTSL 518

Query: 65  RSLWMSSCSVSYGACKLLGQKMPRLNVEVIDER--------GPPDSRPESCPVEKLYIYR 116
           R LW+     S     LL    P  N+E+I  R         P + +  + P   L  Y 
Sbjct: 519 RYLWVQGYGASSSGSGLLAMARPFWNIELIPSRQVAVNNNVNPDEPQVVTHPAHILAYY- 577

Query: 117 TVAGPRFDMPGFV 129
           ++AG R D P  V
Sbjct: 578 SLAGLRSDFPNSV 590