Jatropha Genome Database

JcCA0153521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153521.20 + phase: 0 
         (226 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g103060.1 hypothetical protein chr03_pseudomolecule_I...   325   2e-89

>IMGA|Medtr3g103060.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 25279436-25276713 F
           EGN_Mt090430 20090702
          Length = 227

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 165/228 (72%), Positives = 193/228 (84%), Gaps = 3/228 (1%)

Query: 1   MEVGLSLNALVRLPLSNSS-RTHEDVLVKHSLFTSRTGQKSQHRKTLLVVNAKGKRGMQA 59
           MEVG+SLNAL+  PLS+SS R H D L        RT ++ QH   +LVV AK K+GM +
Sbjct: 1   MEVGMSLNALLHPPLSSSSSRFHNDSLFSMPRQFPRTQRQHQHHH-VLVVEAKSKKGMMS 59

Query: 60  RQFQRPPAPSLPKIEDDGNPKFLIFIRMANVYLWYPLSLVTGGTTAKITVAAKDNFLGKY 119
           RQ+QR P P LPKIEDDGNPKF++FIRMANVYLWYPLS+V+GGTTAKI VAAKDNFLGK+
Sbjct: 60  RQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKF 119

Query: 120 IYKDTLARNLAAVIYRDEKEIQKTAFKQYRVLRSATEFRYGYKLVENGNMRAALSTSDVI 179
           IYKDTL RNLAAVIYRDEKEIQK+AFKQ+RVL+SATEFRYGYKLVENGN++AALSTSDVI
Sbjct: 120 IYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVI 179

Query: 180 ELPTEDQLKTVFDKVKDFFGGAKESFGKLTALNSA-EETEEVSKENTK 226
           +LPT D+LKTV DKVKDFFG  KESFG++T+L +A +E+E+ SKE TK
Sbjct: 180 QLPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEDDSKEKTK 227