Jatropha Genome Database

JcCA0153501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153501.10 - phase: 0 /pseudo/partial
         (168 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g025370.1 Tubby; Cyclin-like F-box chr02_pseudomolecu...   102   9e-23
IMGA|Medtr1g125200.1 Tubby; Cyclin-like F-box chr01_pseudomolecu...    94   2e-20
IMGA|Medtr2g008070.1 Tubby; Cyclin-like F-box chr02_pseudomolecu...    94   4e-20
IMGA|Medtr2g025370.2 Cyclin-like F-box chr02_pseudomolecule_IMGA...    91   2e-19
IMGA|Medtr1g125200.2 Cyclin-like F-box chr01_pseudomolecule_IMGA...    86   8e-18
IMGA|Medtr1g028050.1 Tubby; Cyclin-like F-box chr01_pseudomolecu...    74   5e-14
IMGA|Medtr5g020460.1 Tubby; Cyclin-like F-box chr05_pseudomolecu...    68   3e-12
IMGA|Medtr8g093360.1 Tubby; Cyclin-like F-box chr08_pseudomolecu...    65   2e-11
IMGA|Medtr8g093330.1 Tubby; Cyclin-like F-box chr08_pseudomolecu...    64   3e-11
IMGA|Medtr2g091950.1 Tubby; Cyclin-like F-box chr02_pseudomolecu...    59   9e-10
IMGA|Medtr2g091960.1 Tubby; Cyclin-like F-box chr02_pseudomolecu...    57   5e-09

>IMGA|Medtr2g025370.1 Tubby; Cyclin-like F-box
           chr02_pseudomolecule_IMGAG_V3 6717605-6712248 E
           EGN_Mt090430 20090702
          Length = 404

 Score =  102 bits (254), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 76/134 (56%), Gaps = 6/134 (4%)

Query: 38  DAFNQSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFL 97
           D+  QSCWANMP ELLR+VL+RIEASE TWP RKNVVACAGVCR+WR I K++ K     
Sbjct: 32  DSLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRVITKEIVKKPEIS 91

Query: 98  ANXRFRYPXSSQVPGIPFFSATSNEIVATKHIICTSAXTKLQTMMVS---FFLLHGGAGG 154
           A     +P S + PG P  +     I   +          L + +     F L       
Sbjct: 92  A--MITFPISVKQPG-PRENLLQCFIKRNRSTQTYYLFLSLTSSLGDDGKFLLAARKCRR 148

Query: 155 PTCTDYIISLNCDD 168
           PTCTDYIISL+ DD
Sbjct: 149 PTCTDYIISLDADD 162


>IMGA|Medtr1g125200.1 Tubby; Cyclin-like F-box
           chr01_pseudomolecule_IMGAG_V3 27545376-27541451 F
           EGN_Mt090430 20090702
          Length = 431

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 12/174 (6%)

Query: 1   MRGEFGSMSRKGFDVKF-GYGMXXXXXXXXXXXXFVPVDAFNQSCWANMPPELLRDVLMR 59
           +R  FGS+SR+ F+V+  G+                PV     S WA++PPELLRDV+ R
Sbjct: 10  VRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPV--IQNSPWASLPPELLRDVIKR 67

Query: 60  IEASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFLANXRFRYPXSSQVPG-----IP 114
           +EA+E TWP RK+VVACA VC++WRE+ K++     +    +  +P S + PG     I 
Sbjct: 68  LEATESTWPGRKHVVACAAVCKSWREMCKEIVNSLEYCG--KITFPVSLKQPGYRDGPIQ 125

Query: 115 FFSATSNEIVATKHIICTSAXTKLQTMMVSFFLLHGGAGGPTCTDYIISLNCDD 168
            F       +     +C S    L      F L        TCT+Y+IS++ D+
Sbjct: 126 CFIKRDKSKLTYHLFLCLSP--ALLVENGKFLLSAKRTRRTTCTEYVISMDADN 177


>IMGA|Medtr2g008070.1 Tubby; Cyclin-like F-box
           chr02_pseudomolecule_IMGAG_V3 1383118-1379338 F
           EGN_Mt090430 20090702
          Length = 427

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 1   MRGEFGSMSRKGFDVKF-GYGMXXXXXXXXXXXXFVPVDAFNQSCWANMPPELLRDVLMR 59
           +R  FGS+SR+ FDVK  G+                P+     SCWAN+PPELL DV+ R
Sbjct: 10  VRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPL-VIQNSCWANLPPELLFDVIRR 68

Query: 60  IEASECTWPSRKNVVACAGVCRNWREIMKKLXKLWRFLANXRFRYPXSSQVPG-----IP 114
           +E SE TWPSRK+VVACA VC++WR + K + +   F    +  +P S + PG     I 
Sbjct: 69  LEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCG--KLTFPVSLKQPGPRDGIIQ 126

Query: 115 FFSATSNEIVATKHIICTSAXTKLQTMMVSFFLLHGGAGGPTCTDYIISLNCDD 168
            F       +     +C S    L      F L        T T+Y+IS++ D+
Sbjct: 127 CFIKRDKSNLTYHLFLCLSP--ALLVENGKFLLSAKRTRRTTYTEYVISMDADN 178


>IMGA|Medtr2g025370.2 Cyclin-like F-box
          chr02_pseudomolecule_IMGAG_V3 6717605-6712248 E
          EGN_Mt090430 20090702
          Length = 112

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query: 38 DAFNQSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXK 92
          D+  QSCWANMP ELLR+VL+RIEASE TWP RKNVVACAGVCR+WR I K++ K
Sbjct: 32 DSLRQSCWANMPQELLREVLLRIEASEDTWPPRKNVVACAGVCRSWRVITKEIVK 86


>IMGA|Medtr1g125200.2 Cyclin-like F-box
          chr01_pseudomolecule_IMGAG_V3 27545376-27543010 F
          EGN_Mt090430 20090702
          Length = 133

 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 3/91 (3%)

Query: 1  MRGEFGSMSRKGFDVKF-GYGMXXXXXXXXXXXXFVPVDAFNQSCWANMPPELLRDVLMR 59
          +R  FGS+SR+ F+V+  G+                PV     S WA++PPELLRDV+ R
Sbjct: 10 VRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPV--IQNSPWASLPPELLRDVIKR 67

Query: 60 IEASECTWPSRKNVVACAGVCRNWREIMKKL 90
          +EA+E TWP RK+VVACA VC++WRE+ K++
Sbjct: 68 LEATESTWPGRKHVVACAAVCKSWREMCKEI 98


>IMGA|Medtr1g028050.1 Tubby; Cyclin-like F-box
          chr01_pseudomolecule_IMGAG_V3 6716040-6717770 H
          EGN_Mt090430 20090702
          Length = 225

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 42 QSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMK 88
          QS WAN+PPELL D++ R+EASE TWPS + +VACA VCR WR+I K
Sbjct: 50 QSQWANLPPELLLDIIQRVEASETTWPSLRALVACASVCRLWRDITK 96


>IMGA|Medtr5g020460.1 Tubby; Cyclin-like F-box
           chr05_pseudomolecule_IMGAG_V3 7743266-7739685 F
           EGN_Mt090430 20090702
          Length = 416

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 1   MRGEFGSMSRKGFDVKFGYGMXXXXXXXXXXXXFVPVDAFNQSCWANMPPELLRDVLMRI 60
           MR   G+ SR+G  V   +                 ++   Q  WAN+P ELL D++ R+
Sbjct: 13  MRDGIGNTSRRG--VASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRV 70

Query: 61  EASECTWPSRKNVVACAGVCRNWREIMKKL 90
           E +E +WP+R  VV+CA VC++WR + +++
Sbjct: 71  EETETSWPARAVVVSCASVCKSWRAVTQEI 100


>IMGA|Medtr8g093360.1 Tubby; Cyclin-like F-box
           chr08_pseudomolecule_IMGAG_V3 20484690-20483010 E
           EGN_Mt090430 20090702
          Length = 391

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 35  VPVDAFNQSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXKLW 94
            P++   Q  WA++PPELL D++ R+E SE  WP+R  V+ CA VC++WR    ++ K  
Sbjct: 38  TPIEPIQQGQWASLPPELLLDIIRRVEKSETFWPARAVVIFCASVCKSWRSATLEIVKTP 97

Query: 95  RFLANXRFRYPXSSQVPG 112
           +     R  +P S + PG
Sbjct: 98  QQCG--RITFPISVKQPG 113


>IMGA|Medtr8g093330.1 Tubby; Cyclin-like F-box
          chr08_pseudomolecule_IMGAG_V3 20463592-20460613 E
          EGN_Mt090430 20090702
          Length = 364

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query: 36 PVDAFNQSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREI 86
          P++   Q  WA +PPELL D++ R+E S  +WP+R  VV CA VC++WR I
Sbjct: 43 PIEPVQQGQWAYLPPELLLDIIRRVEESATSWPARAIVVCCASVCKSWRSI 93


>IMGA|Medtr2g091950.1 Tubby; Cyclin-like F-box
          chr02_pseudomolecule_IMGAG_V3 20897048-20901698 F
          EGN_Mt090430 20090702
          Length = 371

 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 36/48 (75%)

Query: 45 WANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKLXK 92
          W+ M P+LL +++ R++ +E  WP R+NVVACA VC+ WR+I +++ K
Sbjct: 42 WSTMLPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVK 89


>IMGA|Medtr2g091960.1 Tubby; Cyclin-like F-box
          chr02_pseudomolecule_IMGAG_V3 20903183-20907255 H
          EGN_Mt090430 20090702
          Length = 378

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 39/56 (69%)

Query: 35 VPVDAFNQSCWANMPPELLRDVLMRIEASECTWPSRKNVVACAGVCRNWREIMKKL 90
          V  ++ +++ W+ M PE+L D++ R++     WP R+NVVACA VC+ WR+I +++
Sbjct: 27 VGSESEDKTDWSTMLPEVLADIIKRVDVIGEQWPHRRNVVACACVCKRWRDITREV 82