Jatropha Genome Database

JcCA0153321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153321.10 - phase: 0 
         (588 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g037360.1 nucleoside-triphosphatase/ nucleotide bindi...    55   7e-08
IMGA|Medtr3g100710.1 AAA ATPase, central region chr03_pseudomole...    51   1e-06

>IMGA|Medtr1g037360.1 nucleoside-triphosphatase/ nucleotide binding,
           related chr01_pseudomolecule_IMGAG_V3 8761038-8769838 E
           EGN_Mt090430 20090702
          Length = 1178

 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 343 WTEKYRPKAPNDIIGNQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQND------------ 390
           W  KY+P   +++ GN   +N L  WL +W E+         +K Q D            
Sbjct: 279 WIHKYKPTKASEVCGNDESLNFLRDWLHHWHERRYQNRKDSSNKDQTDIPDGDGDYNCAG 338

Query: 391 -----------SGAKKAVLLSGTPGIGKTTAAKLVSRMLGFQAIEVNASDSRGKADNKIS 439
                         K  +L++G  G GK+ A    ++  GF+ +E+N SD R     K  
Sbjct: 339 CDYASKDVSEEGSLKNVLLITGPVGSGKSAAVYACAQEQGFEVLELNTSDCRNATAVKQY 398

Query: 440 KGIGGSNANCIKELV 454
            G     + C+K LV
Sbjct: 399 FG-DALGSQCVKSLV 412


>IMGA|Medtr3g100710.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24169522-24164910 E
           EGN_Mt090430 20090702
          Length = 339

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 40/155 (25%)

Query: 337 ICSSLPWTEKYRPKAPNDIIGNQSLVNQLHSWLKNWDEQFLGTGNKGKSKKQNDSGAKKA 396
           I S+ PW EKYRPK   D+   + +V  L + L                    ++G+   
Sbjct: 5   IQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTL--------------------ETGSCPH 44

Query: 397 VLLSGTPGIGKTTAAKLVSRMLG------FQAIEVNASDSRGKADNKISKGIGGSNANCI 450
           +L  G PG GKTT A  ++  L        + +E+NASD RG   N +   I    A   
Sbjct: 45  MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--NVVRTKIKDFAA--- 99

Query: 451 KELVSNEALGVNMDRSKH---PKTVLIMDEVDGMS 482
                  A+G N  ++ +   P  ++++DE D M+
Sbjct: 100 ------VAVGTNKPKNGYPCPPYKIIVLDEADSMT 128