Jatropha Genome Database
- JcCA0153201.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0153201.10 + phase: 0 /TE/pseudo/partial
(274 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 60 1e-09
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc... 55 3e-08
IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse transc... 55 4e-08
IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse transc... 50 1e-06
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 50 1e-06
IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putat... 48 6e-06
IMGA|Medtr2g104180.1 RNA-directed DNA polymerase (reverse transc... 47 7e-06
IMGA|Medtr1g122160.1 contains similarity to reverse trancriptase... 47 7e-06
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 12 WVCLPSX-GKIRSKFFHFXKDILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMSVFS 70
++ LPS G+ + F++ KD +W R++ ++K+L +A KE+L+KSVAQ + +Y MSVF
Sbjct: 571 YLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYCMSVFL 630
Query: 71 LPLSIYD 77
LP SI D
Sbjct: 631 LPHSIAD 637
>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
E EGN_Mt090430 20090702
Length = 566
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 26 FHFXKDILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMSVFSLPLSIYD 77
F F KD +WKR+N W + L +A KE+++KSV Q + +Y MS++ LP S+ D
Sbjct: 145 FSFIKDSIWKRINVWRGRALSKAGKEVMIKSVLQSIPSYIMSIYLLPSSVID 196
>IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
6753317-6752601 H EGN_Mt090430 20090702
Length = 238
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 19 GKIRSKFFHFXKDILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMSVFSLPLSIYD 77
G+ + F F KD +W+++N+W + L +A KE+++KS Q + TY MS+F +P S+ D
Sbjct: 3 GRSKKDMFKFIKDQVWRKINSWGGRSLSKAGKEVMIKSALQSIPTYFMSIFLIPSSLGD 61
>IMGA|Medtr5g083870.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
31873812-31875697 H EGN_Mt090430 20090702
Length = 485
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 40/59 (67%)
Query: 19 GKIRSKFFHFXKDILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMSVFSLPLSIYD 77
G+ ++ F + KD +W+++N+W + L +A KE+++K V Q + +Y MS++ LP ++ +
Sbjct: 32 GRSKTTTFAYIKDRIWQKINSWRGRALSKAGKEVMIKFVLQSIPSYIMSIYVLPRTVIN 90
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 31 DILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMSVFSLPLSIYD 77
D +WKR+N W + L +A KE+++KSV Q + +Y MS++ +P S+ D
Sbjct: 251 DRIWKRINAWRGRALSKAGKEVMIKSVLQSIPSYIMSIYLMPSSVID 297
>IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putative
chr04_pseudomolecule_IMGAG_V3 4275704-4277642 H
EGN_Mt090430 20090702
Length = 171
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 9 VSIWVCLPSX-GKIRSKFFHFXKDILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMS 67
++ LPS G+ + F + KD +W+++N+W + L ++ KE ++KSV Q++ +Y MS
Sbjct: 93 TGTYLGLPSMVGRSKKATFGYIKDKIWRKINSWRGRSLSKSGKETMIKSVLQLIPSYIMS 152
Query: 68 VFSLPLSIYD 77
+L ++D
Sbjct: 153 CSNLKRDMFD 162
>IMGA|Medtr2g104180.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
24503551-24503384 H EGN_Mt090430 20090702
Length = 55
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 26 FHFXKDILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMSVFSLPLS 74
F++ +D +WKR+ +W+ K L +A +EIL+K V Q++ Y MS+F L +S
Sbjct: 5 FNYVRDRIWKRIESWHGKHLFKAGREILIKFVVQLVPAYQMSIFLLLMS 53
>IMGA|Medtr1g122160.1 contains similarity to reverse trancriptase,
related, putative chr01_pseudomolecule_IMGAG_V3
26789109-26788828 H EGN_Mt090430 20090702
Length = 93
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 19 GKIRSKFFHFXKDILWKRVNNWNNKLLLRACKEILLKSVAQVLSTYAMSVFSLPLSI 75
G+ + + FHF D +WK++ W K L + +L+++VAQ + TY MS F LP +
Sbjct: 6 GRSKEQDFHFIMDKIWKKLKGWKEKCLSFEGRGVLIRAVAQAIPTYYMSCFLLPKGL 62