Jatropha Genome Database

JcCA0152411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.20 + phase: 0 
         (209 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g107090.1 Transmembrane protein 205, related chr01_ps...   323   4e-89
IMGA|Medtr1g107290.1 hypothetical protein chr01_pseudomolecule_I...   125   2e-29

>IMGA|Medtr1g107090.1 Transmembrane protein 205, related
           chr01_pseudomolecule_IMGAG_V3 22512108-22516059 F
           EGN_Mt090430 20090702
          Length = 208

 Score =  323 bits (828), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 159/209 (76%), Positives = 172/209 (82%), Gaps = 1/209 (0%)

Query: 1   MGWLTRFLAAVAFLAIGVIFSPETFGSKSVSQLSTYLKLAHLLSFSTAFGAALWVTFIGG 60
           MG  T    AV FLAIGVIFSPETFGSKS + LSTY+KLAHLL FS AFGAALWVTFIGG
Sbjct: 1   MGRATLITTAVVFLAIGVIFSPETFGSKSTT-LSTYIKLAHLLGFSIAFGAALWVTFIGG 59

Query: 61  IIMFKNLPRHQFGNLQSKMFPAYFWLVGVCCATSVGSFGYLHPWKSASTAEKYQLGXXXX 120
           IIMFKNLPRHQFGNLQSKMFPAYF +VGVC A +V SFGYLHPWK++ST+++YQLG    
Sbjct: 60  IIMFKNLPRHQFGNLQSKMFPAYFSMVGVCIAVTVASFGYLHPWKTSSTSQRYQLGFLIS 119

Query: 121 XXXXXXXXXXVFTPMTIEMMRQRHKVEREENIGTEVGWSKNQEAAKTNPKLAAMNKKFGM 180
                     VFTPMTIEMM+QRHKVERE +IG EVGWSKN E AK NPKLA MNKKFGM
Sbjct: 120 ALAFNLTNLFVFTPMTIEMMKQRHKVERENSIGEEVGWSKNVEVAKKNPKLAKMNKKFGM 179

Query: 181 IHGFSSLANIMSFGGLAMHSWYLAGKLNL 209
           IHG SSLANIMSFG LA+HSWYLAGKL+L
Sbjct: 180 IHGLSSLANIMSFGSLAIHSWYLAGKLDL 208


>IMGA|Medtr1g107290.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 22605770-22606237 E
           EGN_Mt090430 20090702
          Length = 71

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 63/71 (88%)

Query: 139 MMRQRHKVEREENIGTEVGWSKNQEAAKTNPKLAAMNKKFGMIHGFSSLANIMSFGGLAM 198
           MM+QRHKVERE +IG EVGWSKN E AK NPKLA MNKKFGMIHG SSLANIMSFG LA+
Sbjct: 1   MMKQRHKVERENSIGEEVGWSKNVEVAKKNPKLAKMNKKFGMIHGLSSLANIMSFGSLAI 60

Query: 199 HSWYLAGKLNL 209
           HSWYLAGKL+L
Sbjct: 61  HSWYLAGKLDL 71