Jatropha Genome Database

JcCA0152411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.10 - phase: 0 /partial
         (958 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g107030.1 BRCT; Zinc finger, FYVE/PHD-type chr01_pseu...   372   e-103

>IMGA|Medtr1g107030.1 BRCT; Zinc finger, FYVE/PHD-type
           chr01_pseudomolecule_IMGAG_V3 22500941-22493346 E
           EGN_Mt090430 20090702
          Length = 1332

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 234/334 (70%), Gaps = 26/334 (7%)

Query: 1   MLDSNSPSKTFLGVRFVLFGFDSIHERQVRAKLLNGGGVDAGQYSQSCSHLIVDKIVYDD 60
           ML+++  S+ F GV F LFGFD + E ++R KL+NGGGVDAG+ + +C+H+IVDKI YDD
Sbjct: 1   MLETSHSSRVFRGVHFALFGFDHLTENKIRFKLVNGGGVDAGKNTGNCTHVIVDKIAYDD 60

Query: 61  PLCVAARNDGKTLVTALWVDHSCDIGMAVDATSIMYRPPRDLNGIPGAKHLIMCLTGYQR 120
           P+CVAAR DGKTLVTALWV+HS DIGM VDATS+MYRP + L+GIPGAK L++CLTGY R
Sbjct: 61  PVCVAAREDGKTLVTALWVEHSADIGMPVDATSVMYRPLKKLDGIPGAKDLVVCLTGYLR 120

Query: 121 QDRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKIKLVNHRWLEDCL 180
           QDRDDIMTMV LMGAQFSKPLVANKVTHLICYKFEGEKYELA +L  IKLVNHRWLEDCL
Sbjct: 121 QDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLATIKLVNHRWLEDCL 180

Query: 181 RDWELLPEDNYNKSGYEMEMMEAEAKDSEEDVEDITVKQSSHQITYKSP-HLKIST---- 235
           +DW LLPED YNKSG+E+EMM  EAKDSE++ ED  + QS  +   KSP   K  T    
Sbjct: 181 KDWVLLPEDKYNKSGFELEMMAEEAKDSEDEAEDSKLGQSGGRTISKSPLGSKFGTTATH 240

Query: 236 --PKPCQ------LPKSTGELPKMPQILSEPEGLPSA-VNKDMLLTPGRKHRIDTAVGID 286
              KP +      +P STG           P+  P+A   KD  +T G K+     V ++
Sbjct: 241 GLSKPLREEASNAIPNSTG-----------PQVFPNANKGKDSSITTGNKNNSGQDVDLN 289

Query: 287 NTCVSEVLACQVSGASNDAISVGLPDLQDRTPKS 320
           N    +V +CQV   S  + S  LP+   RT +S
Sbjct: 290 NIGDLKV-SCQVPDVSLHSTSCQLPESYVRTIES 322



 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 198/404 (49%), Gaps = 44/404 (10%)

Query: 573 DNLEELHEGNRNLVTKQGRKKTIARKTLGSRPKLNSTANQKGSIYSNIVSLQNDLTIVLP 632
           DNL+  +E +  L+ K  RKK+ A++TLGSRP+   TA  K S+  N  + Q++   V  
Sbjct: 598 DNLDLSNEESNKLIRKSPRKKSAAKRTLGSRPRKGVTAKLKSSVCLNKTTQQDEG--VSS 655

Query: 633 GERTDHEKLYSANEPETSPDTFNVSAINEADKKNCTRTGDSFEIETNFMDDETEASEDKA 692
             R+       A E + SP   +V+ + E    N    G      T+F+DDETEA +DK 
Sbjct: 656 SGRSKEIATSGAKERQASPQILDVNKLMEQKPVNGYAEGAGG--RTDFLDDETEAPDDKC 713

Query: 693 ------------VDLSHKADNEMELKQEGALHTTNDAASGMEESGKEEKIAADQLQQ--- 737
                       V LS K D   E K E   H         EE    +K+  +  +Q   
Sbjct: 714 ESELGMAPNEELVHLSKKVDTSTEEKLEAVNHDKK-----CEEPLPPKKVTNETKKQNLP 768

Query: 738 -KDESTCKVNGLKGKVSKGKRQPSGKARTKTKTVPPVPEQAKATEDLQGKDICKGNVEEK 796
            + +ST K+        K K Q   +  +KTK        AK+ + + G+ I     +E 
Sbjct: 769 SELDSTSKL--------KVKHQAIKRPASKTKKTTVAKRLAKSEKAVFGEKIPNETRDEA 820

Query: 797 AIERXXXXXXXXXXXXXRNVDGXXXXXXXXXXXXXXPIEGGGQDINQPREPLGKTMVKSD 856
            I+               N +                    G+   + R       V++ 
Sbjct: 821 EIKILKEMSLSVPSDISENSNAPKNKPENFIEEEKENRPNDGEHGLEERR-----NVRTT 875

Query: 857 KVSLK---VKQKSWKNNPNCTPVREVSKQVKTEPVWFILSGHKLQRKEFQQVIRRLKGKV 913
           K S+K   +K K  K+ P+ +   E + +VK E   FILSGH+LQRKEFQQVI+RLKG+V
Sbjct: 876 KSSVKPANIKSKEMKHAPSTS---EFNARVKPETTCFILSGHRLQRKEFQQVIKRLKGRV 932

Query: 914 CRDSHQWSYQATHFITPDPIRRTEKFFAAAASGRWILKTDYLTA 957
           CRDSHQWSYQATHFI PDP+RRTEKFFAA ASGRWILKTD+L+A
Sbjct: 933 CRDSHQWSYQATHFIAPDPLRRTEKFFAATASGRWILKTDFLSA 976