Jatropha Genome Database

JcCA0152151.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152151.30 - phase: 0 
         (272 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g156420.1 ER lumen protein retaining receptor; Orn/DA...   437   e-123
IMGA|Medtr4g135750.1 ER lumen protein retaining receptor chr04_p...    96   1e-20

>IMGA|Medtr3g156420.1 ER lumen protein retaining receptor;
           Orn/DAP/Arg decarboxylase 2
           chr03_pseudomolecule_IMGAG_V3 41010513-41005039 E
           EGN_Mt090430 20090702
          Length = 493

 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/271 (76%), Positives = 227/271 (83%)

Query: 1   MRPQRRPIHVVTTWVRRQPPKVKAFXXXXXXXXXXXXXRFIVHDHDNLFVAAEAVHSIGI 60
           M+  + PIH VT W+RRQPPK+K F             R IVHDHDNLFVAAE VH++G+
Sbjct: 1   MKATKSPIHAVTKWLRRQPPKMKLFLAILSGIAALVFLRMIVHDHDNLFVAAEFVHALGV 60

Query: 61  SVLIYKLMKEKTCAGLSLKSQELTAMFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYM 120
           ++LIYKL +EKTCAGLSLKSQELTA+FLAVRLYCSFVMEYDIH            WVIYM
Sbjct: 61  ALLIYKLAQEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDTATLGTTLWVIYM 120

Query: 121 IRFKLKSSYMEDKDNFAIYYVVVPCAILALFIHPSTSHNLINRILWAFCVYLEAVSVLPQ 180
           IRFKLKSSYM+ KDN AIYYVV+PCA+L+L IHP+T H+  NRILWAFCVYLEAVSVLPQ
Sbjct: 121 IRFKLKSSYMDAKDNLAIYYVVIPCAVLSLLIHPTTRHHYANRILWAFCVYLEAVSVLPQ 180

Query: 181 LRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGHLLVALGYGLWPSMVLISE 240
           LRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRG LL ALGYGLWPSMVL+SE
Sbjct: 181 LRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSE 240

Query: 241 IVQTFILADFCYYYVKSVFGGQLVLRLPSGV 271
           IVQT ILADFCYYY+KS+ GGQLVLRLPSGV
Sbjct: 241 IVQTSILADFCYYYIKSLVGGQLVLRLPSGV 271


>IMGA|Medtr4g135750.1 ER lumen protein retaining receptor
           chr04_pseudomolecule_IMGAG_V3 33084692-33080004 E
           EGN_Mt090430 20090702
          Length = 215

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 21/229 (9%)

Query: 47  NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAM-FLA--VRLYCSFVMEYDI 102
           N+F +A +  H + I VL+ K+   K+C+G+S K+QEL A+ FLA  + L+  F+  Y+ 
Sbjct: 2   NIFRLAGDMTHLLSILVLLLKIYATKSCSGVSRKTQELYAIVFLARYLDLFTDFISVYNT 61

Query: 103 HXXXXXXXXXXXXWVIYMIRFK--LKSSYMEDKDNFAIYYVVVPCAILALFIHPSTSHNL 160
                         +++ IR    +K SY +D D F  Y +V    +LALF+H   +   
Sbjct: 62  FMKIVFIASSLA--IVWCIRVHPMVKRSYDKDLDTFRHYLLVAASFLLALFLHEKFT--- 116

Query: 161 INRILWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTR 220
              I WAF +YLEAV++LPQL ++Q +  V+  T  YVF LG  R L   +W+ + L   
Sbjct: 117 FLEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAYRGLYILNWIYRYLTEP 176

Query: 221 GHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 269
                   +  W  +  +S +VQT + ADF YYY  S +     L+LP+
Sbjct: 177 -------RFTRW--IACVSGVVQTALYADFFYYYFIS-WKNNSKLKLPA 215