Jatropha Genome Database

JcCA0152031.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.30 + phase: 0 
         (188 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g033170.1 hypothetical protein chr04_pseudomolecule_I...   214   2e-56

>IMGA|Medtr4g033170.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 8144573-8149542 H
           EGN_Mt090430 20090702
          Length = 198

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 135/188 (71%), Gaps = 1/188 (0%)

Query: 1   MESIVKKYQQRFRKVREEMDKWDHLQSRLLSQFINASSIISRLQVIRDSNNYGNLSGVDG 60
           ME +VKK+Q +F KVREEM++WD LQSRL+SQF NAS I+ RLQV++ S+NYG L+ V  
Sbjct: 1   MEMMVKKFQSKFNKVREEMNQWDELQSRLISQFRNASHIVDRLQVLQKSSNYGILNCVGA 60

Query: 61  IVDAVLRKQMDSLETILLSMNKTLEDFRSIVLFLEKMYKDGRQLVKGGPNQLTTKQLQQR 120
           + D +L+KQ+DSL TI  SM KTLE+F  IVL LEKM++DGRQLVKG  ++ T KQLQQR
Sbjct: 61  VSDVLLQKQIDSLNTISFSMRKTLEEFHCIVLSLEKMHRDGRQLVKGSSSRPTMKQLQQR 120

Query: 121 VGVKPCLADCLDGLMILHDMHRSEYXXXXXXXXXXXXXXXXPS-SGDLAALQQLMVDQPN 179
           VGVKP L DCLDGL  LH+++ SEY                PS + DL ALQQL+VDQPN
Sbjct: 121 VGVKPTLIDCLDGLSFLHEIYYSEYLLKTSIVSALSSMALIPSNASDLGALQQLLVDQPN 180

Query: 180 IPKEEGTS 187
           I  EE  S
Sbjct: 181 ILTEEVQS 188