Jatropha Genome Database

JcCA0152031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.10 + phase: 0 /pseudo/partial
         (314 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g106770.1 EPS15 homology (EH) chr05_pseudomolecule_IM...   149   2e-36
IMGA|Medtr1g023400.1 Calcium-binding EF-hand chr01_pseudomolecul...   127   5e-30

>IMGA|Medtr5g106770.1 EPS15 homology (EH)
           chr05_pseudomolecule_IMGAG_V3 43009628-43020393 E
           EGN_Mt090430 20090702
          Length = 1001

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 142/288 (49%), Gaps = 41/288 (14%)

Query: 1   MERGGSADGILQVRADRIQSDLDELMKGFKLNVARDMGXRXXXXXXXXXPIGWQPGIQEG 60
           +E+  + D  ++VRADRI SD DEL+K       +  G R         P GWQPGIQEG
Sbjct: 624 LEQDVNTDDTVKVRADRINSDFDELVKSLN-ERCKKYGLRAKPTTLVELPFGWQPGIQEG 682

Query: 61  AAVWDEEWDKFEDEGF--ANDLMLDMKNVSAP---------NSKSTIQDGSPTHDSLSNG 109
           AA WDE+WDK ED+ F    +  LD++N + P         N+K+   D SP   +    
Sbjct: 683 AADWDEDWDKLEDKEFTLVKEYTLDVQNTTVPPKQKQPKAVNAKALDID-SPKFVASPKS 741

Query: 110 DDKSGNFSRVDGHGIEGESVYSHSEDELARSPQSSLAGRNALGSPSKAF----------S 159
           DDKS      +  GI   SVY+ S+D  A+S  +S    + +GSP + F           
Sbjct: 742 DDKSEKPQTTNEQGIGNGSVYNKSDDGSAKSAPNSPFASSTIGSPHRDFVDSDIPKTSGE 801

Query: 160 DVFAKSTDADAETH-------------RSFDESTWGAFDTHDDTDSVWGFNPAST----K 202
           D   ++ D   ET              R FDE  WG FDT+DD DSVWGFN +S     +
Sbjct: 802 DSSPRNQDEAQETQSDHGGEKSVFSEERVFDEPNWGTFDTNDDIDSVWGFNASSITKEER 861

Query: 203 DSDSDKHRDFFGIDDFGIKPIRTGSLSSESIFQKKSPF-FEDSVAGSP 249
           + D      FF   D G+ PI+T S  +  +FQK S F F+DSV  +P
Sbjct: 862 ELDGAGDNYFFSSGDLGLNPIKTSSPQAADLFQKTSGFSFDDSVPSTP 909


>IMGA|Medtr1g023400.1 Calcium-binding EF-hand
           chr01_pseudomolecule_IMGAG_V3 5183293-5174794 E
           EGN_Mt090430 20090702
          Length = 808

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 128/273 (46%), Gaps = 36/273 (13%)

Query: 1   MERGGSADGILQVRADRIQSDLDELMKGFKLNVARDMGXRXXXXXXXXXPIGWQPGIQEG 60
           +E+  + D  +QVRADRI   LDEL+K       +  G R         P GWQPGIQEG
Sbjct: 536 LEQDVNTDDTVQVRADRINFVLDELVKSLN-EQCKKYGLRAKLTTLLELPFGWQPGIQEG 594

Query: 61  AAVWDEEWDKFEDEGFA--NDLMLDMKN-VSAPNSKS-------TIQDGSPTHDSLSNGD 110
           AA WDE+WD+ ED+ FA   +  LD++N ++ PN K         +   SP        D
Sbjct: 595 AADWDEDWDELEDKEFALVKEYTLDVQNTIAHPNQKQPKAVSTKALDINSPKFVVSPKSD 654

Query: 111 DKSGNFSRVDGHGIEGESVYSHSEDELARSPQSSLAGRNALGSPSKAFSDVFAKSTDADA 170
           DKS      +  G+   SV+  S D   +S  +S    + +G P + F D   + T  + 
Sbjct: 655 DKSEKPQTTNEQGVGNGSVFDKSNDGSEKSAPNSPFASSTIGRPHRDFVDSDIRKTSGEN 714

Query: 171 ETHRS-----------------------FDESTWGAFDTHDDTDSVWGFNPASTKDSDSD 207
            + R+                       FDE  WG FDT+DD DSVWGFN +S ++ + D
Sbjct: 715 SSPRNQNDTQETQSDHGGEKSVFSEERVFDEPNWGTFDTNDDIDSVWGFNASSKEERELD 774

Query: 208 KHRD--FFGIDDFGIKPIRTGSLSSESIFQKKS 238
              D  FF   D G+  I+T S  +  +F K S
Sbjct: 775 GAGDNYFFSSGDLGLNRIKTSSPQAGDLFLKTS 807