Jatropha Genome Database

JcCA0151751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151751.20 - phase: 0 
         (232 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g088880.1 BRO1 chr06_pseudomolecule_IMGAG_V3 18030668...   226   1e-59
IMGA|Medtr7g094330.1 BRO1 chr07_pseudomolecule_IMGAG_V3 21361297...   174   3e-44
IMGA|Medtr6g089030.1 hypothetical protein chr06_pseudomolecule_I...    74   7e-14

>IMGA|Medtr6g088880.1 BRO1 chr06_pseudomolecule_IMGAG_V3
           18030668-18034506 E EGN_Mt090430 20090702
          Length = 424

 Score =  226 bits (575), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 150/238 (63%), Gaps = 22/238 (9%)

Query: 5   FLDAAGYLNFSIQHVLPRFPPDIRKDLPLDLGEGVLRALCLQALGQGVDLQLGMAIDSVK 64
           FL A+GYL+ +++HVLP+ P ++R++LP+DL EGVLRAL LQALGQGVD+Q+GMAIDS K
Sbjct: 181 FLKASGYLDCAVKHVLPQLPAELRRNLPVDLAEGVLRALSLQALGQGVDIQIGMAIDSAK 240

Query: 65  ATLAVKRRLACEMVKYWHQAQESIVDLPLANGWGEKHKLFIQWXXXXXXXXXXXXHXXXX 124
           ATLAVKRRLACEM+K W QAQ++I++LPLANGWGEKH L ++W            H    
Sbjct: 241 ATLAVKRRLACEMLKCWQQAQDNIMNLPLANGWGEKHHLLVKWKYVEAKAVAYYYHGLIL 300

Query: 125 XXXXXXXSTEMXXXXXXXXXMLWHGSRKACESFHRNPPVSRNPILWGTSKFLSEK----- 179
                  S  M           +  S+K CE+F+  PP+SRNP LWGT K+LSEK     
Sbjct: 301 DEGNTEKSHGMAVAALQAADEYFKESKKLCEAFNTAPPLSRNPPLWGTMKYLSEKNSQGY 360

Query: 180 ------IPRD-------KSSNEDQHN----HEMILRTAPALPEFALSLEPDEYQLPAV 220
                  PR        K    +  N    ++ I+ TAP LPEF+L+L+PDEYQLP V
Sbjct: 361 FKQGANKPRSVHPRKYMKKKRTNVSNTAVFYDRIMETAPTLPEFSLALKPDEYQLPPV 418


>IMGA|Medtr7g094330.1 BRO1 chr07_pseudomolecule_IMGAG_V3
           21361297-21364499 E EGN_Mt090430 20090702
          Length = 412

 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 5   FLDAAGYLNFSIQHVLPRFPPDIRKDLPLDLGEGVLRALCLQALGQGVDLQLGMAIDSVK 64
            L A+GYL F ++ +LP+ P + +K LP DL EGVL A+ +QALGQG ++QLG+A+DS K
Sbjct: 163 LLKASGYLEFCVRKILPQIPAETKKILPHDLQEGVLEAIAIQALGQGTEIQLGLAVDSQK 222

Query: 65  ATLAVKRRLACEMVKYWHQAQESIVDLPLANGWGEKHKLFIQWXXXXXXXXXXXXHXXXX 124
           ATL+VKRR+ACE + Y+ QA  S+ +     G G+KH  FI+W            H    
Sbjct: 223 ATLSVKRRMACEQLIYFSQAYHSLSECDFNQGHGKKHLRFIKWKFLESKATAYYYHGLIL 282

Query: 125 XXXXXXXSTEMXXXXXXXXXMLWHGSRKACESFHRNPPVSRNPILWGTSKFLSEKIPRDK 184
                  S  +          L   S+KAC SF    PV+R P +WG  K L++KIP   
Sbjct: 283 DKGNEPSSHILAVSCFLAAEELLQESKKACLSFCLAAPVTRAPPIWGVMKLLNQKIPEVA 342

Query: 185 SSNEDQHNHEM-----ILRTAPALPEFALSLEPDEYQLPAVDPSWNG 226
           S     + + +     + +  P LPEF LSL PDEY+LP +DP+W+ 
Sbjct: 343 SKKYQMYGYLLEQEKGLHQALPDLPEFQLSLHPDEYELPEIDPAWDS 389


>IMGA|Medtr6g089030.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 18070736-18071092 E
           EGN_Mt090430 20090702
          Length = 75

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 4/55 (7%)

Query: 174 KFLSEKIPRDKSS----NEDQHNHEMILRTAPALPEFALSLEPDEYQLPAVDPSW 224
           K+LSEKIP+D SS    N D + HE I+ TAP LPEF+L+L+PDEYQLP VD SW
Sbjct: 2   KYLSEKIPKDTSSKVRINRDLYTHERIMETAPTLPEFSLALKPDEYQLPLVDSSW 56