Jatropha Genome Database

JcCA0151591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151591.20 - phase: 0 /TE
         (855 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy...    58   2e-08
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H...    57   3e-08
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy...    52   1e-06
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy...    50   4e-06

>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
           EGN_Mt090430 20090702
          Length = 920

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 96/228 (42%), Gaps = 28/228 (12%)

Query: 141 TWWLDSGATTHVSHIIQEFLSIQPINKTEKFLYMGNGMKARIKGIRTYRLILDTYYYLDI 200
           TW +DSGA+ H+   I+ F S  PI      L  GN   A+  G   +   L        
Sbjct: 391 TWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIA------ 444

Query: 201 EKCLYVPECARNLVSVGRL--DN---IGFNFKICNGVFSFYKHKY---YYGFGTLIDSLY 252
              LYV E   NL+SV +L  DN   + F+   C     F + K      G G LI+ LY
Sbjct: 445 RNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKC-----FIQDKSNLKMTGLGELIEGLY 499

Query: 253 HFNLDVEFVESLFNVDYNIG-NKHSTHNEF--SAFLWHQRLGHISKERILMLVKSEILPQ 309
             NL  + V S FN    I  ++ S+   F     LWH RLGH+S +R+L +   +  P 
Sbjct: 500 FLNLGSQ-VFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRM--QQHFPC 556

Query: 310 LDFTDXDVCIDCIKGKQTKHTLK---NPATRSNELLSRKPWNVIILKS 354
           +      VC  C   +  K   K   N A+   EL+    W  I   S
Sbjct: 557 IKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHS 604


>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
           EGN_Mt090430 20090702
          Length = 883

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 96/228 (42%), Gaps = 28/228 (12%)

Query: 141 TWWLDSGATTHVSHIIQEFLSIQPINKTEKFLYMGNGMKARIKGIRTYRLILDTYYYLDI 200
           TW +DSGA+ H+   I+ F S  PI      L  GN   A+  G  T+   L        
Sbjct: 321 TWIVDSGASDHICSSIKNFDSYAPIIPVHIKLPNGNMAIAKFSGTVTFSPGLIA------ 374

Query: 201 EKCLYVPECARNLVSVGRL--DN---IGFNFKICNGVFSFYKHKY---YYGFGTLIDSLY 252
              LYV E   NL+SV +L  DN   + F+   C     F + K      G G LI+ LY
Sbjct: 375 RNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKC-----FIQDKSNLKMTGLGELIEGLY 429

Query: 253 HFNLDVEFVESLFNVDYNIGNKHSTHNEF---SAFLWHQRLGHISKERILMLVKSEILPQ 309
             NL  + V S FN    I +  ++ +        LWH RLGH+S +R+L +   +  P 
Sbjct: 430 FLNLGSQ-VFSQFNHQPVIASSQASSSTTFLPQEALWHFRLGHLSNDRLLRM--QQHFPC 486

Query: 310 LDFTDXDVCIDCIKGKQTKHTLK---NPATRSNELLSRKPWNVIILKS 354
           +      VC  C   +  K   K   N A+   EL+    W  I   S
Sbjct: 487 IKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHS 534


>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
           EGN_Mt090430 20090702
          Length = 945

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 36/223 (16%)

Query: 135 IEVPNNTWWLDSGATTHVSHIIQEFLSIQPINKTEKFLYMGNGMKARIKGIRTYRLILDT 194
           I   ++ W+LDSGA  H+ +    F S   IN   + + + NG    ++   T R     
Sbjct: 372 INSKSDVWFLDSGANEHIVNNTHWFTSFHKINP--RPVNLPNGSSVLVEYAGTIRFTPQF 429

Query: 195 YYYLDIEKCLYVPECARNLVSVGRLDNIGFNFKICNGVFSFYKHKYYYGFGTLIDSLYHF 254
           Y    +E  LY P    NL+S+         FK+C+ +  +     ++    L+  L+  
Sbjct: 430 Y----LENVLYSPSFTLNLISI---------FKVCSSLNCY---AIFHNKQCLLQDLHSQ 473

Query: 255 NLDVEFVESLFNVDYNIGNKHSTHNEFSAFLWHQRLGHISKERILMLVKSEILPQLDFTD 314
            +              +G +   +  +SA LWH RLGH+S +R++ +  S++ P L    
Sbjct: 474 KM------------IGLGEQFGVYYSYSA-LWHFRLGHVSPKRLIHM--SQLYPTLTVDV 518

Query: 315 XDVCIDCIKGKQTKHTLKNPATRSN---ELLSRKPWNVIILKS 354
              C  C   KQ K    N  + ++   ELL    W  + + S
Sbjct: 519 HATCDICHFAKQKKLPFSNSISVASIKFELLHFDIWGPLSITS 561


>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
           transferase, Ribonuclease H fold
           chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
           EGN_Mt090430 20090702
          Length = 790

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 12/184 (6%)

Query: 142 WWLDSGATTHVSHIIQEFLSIQPINKTEKFLYMGNGMKARIKGIRTYRLILDTYYYLDIE 201
           W +D+GAT H  + +  F S   I      L  G+ ++A   G    +L  D    L I+
Sbjct: 398 WIVDTGATHHTCYDLNWFTSYSKIETINVNLPNGSVIEACYIG--QVKLSKD----LSID 451

Query: 202 KCLYVPECARNLVSVGRL---DNIGFNFKICNGVFSFYKHKYYYGFGTLIDSLYHFNLDV 258
             LY+P+ A NL+SV +L    N    F+    +          G       LY+   D 
Sbjct: 452 NVLYLPKFAVNLISVSKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLETDE 511

Query: 259 EFVESLFNVDYNIGNKHSTHNEFSAFLWHQRLGHISKERILMLVKS-EILPQLDFTDXDV 317
               S+ N+   +   H  H      LWH RLGH+S +R++ + K    +P    T  DV
Sbjct: 512 RNKVSVSNISAQV-ELHQKHVP-DGVLWHLRLGHLSHDRMICMNKMYSYVPVSPHTACDV 569

Query: 318 CIDC 321
           C  C
Sbjct: 570 CQMC 573