Jatropha Genome Database

JcCA0151491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151491.10 + phase: 0 /partial
         (133 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g101690.2 TLDc chr03_pseudomolecule_IMGAG_V3 24659163...   233   1e-62
IMGA|Medtr3g101690.1 TLDc chr03_pseudomolecule_IMGAG_V3 24659163...   233   1e-62
IMGA|Medtr1g065060.1 TLDc chr01_pseudomolecule_IMGAG_V3 12801848...   137   1e-33

>IMGA|Medtr3g101690.2 TLDc chr03_pseudomolecule_IMGAG_V3
           24659163-24662022 E EGN_Mt090430 20090702
          Length = 371

 Score =  233 bits (595), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 122/133 (91%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           VVGD+KGAVFG LVE PL+P++KRKYQGTNST+VF+N  G P+I+ PTG NRYFTLC++D
Sbjct: 239 VVGDKKGAVFGSLVETPLKPSSKRKYQGTNSTYVFSNISGRPIIYHPTGVNRYFTLCNTD 298

Query: 61  FLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFVYGTKYEEIL 120
           ++AIGGGGHFALYLDGDLLNGSSSVSET+GNPCLA S+DFEVKEVELWGFV+ + Y+E+L
Sbjct: 299 YIAIGGGGHFALYLDGDLLNGSSSVSETFGNPCLANSQDFEVKEVELWGFVHTSSYDEVL 358

Query: 121 ALSRTEAPGICRW 133
           ALSRTEAPGI RW
Sbjct: 359 ALSRTEAPGISRW 371


>IMGA|Medtr3g101690.1 TLDc chr03_pseudomolecule_IMGAG_V3
           24659163-24662022 E EGN_Mt090430 20090702
          Length = 372

 Score =  233 bits (595), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 122/133 (91%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           VVGD+KGAVFG LVE PL+P++KRKYQGTNST+VF+N  G P+I+ PTG NRYFTLC++D
Sbjct: 240 VVGDKKGAVFGSLVETPLKPSSKRKYQGTNSTYVFSNISGRPIIYHPTGVNRYFTLCNTD 299

Query: 61  FLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFVYGTKYEEIL 120
           ++AIGGGGHFALYLDGDLLNGSSSVSET+GNPCLA S+DFEVKEVELWGFV+ + Y+E+L
Sbjct: 300 YIAIGGGGHFALYLDGDLLNGSSSVSETFGNPCLANSQDFEVKEVELWGFVHTSSYDEVL 359

Query: 121 ALSRTEAPGICRW 133
           ALSRTEAPGI RW
Sbjct: 360 ALSRTEAPGISRW 372


>IMGA|Medtr1g065060.1 TLDc chr01_pseudomolecule_IMGAG_V3
           12801848-12806118 H EGN_Mt090430 20090702
          Length = 295

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 85/112 (75%)

Query: 1   VVGDRKGAVFGGLVEAPLRPTNKRKYQGTNSTFVFTNTPGHPVIFRPTGANRYFTLCSSD 60
           +VGD KGAVFG L++ PL PT + KYQGT+ TFVFTN   HP IFRPTG NRY+ LCS+D
Sbjct: 181 IVGDMKGAVFGALLDCPLIPTTRPKYQGTHQTFVFTNLDSHPRIFRPTGVNRYYYLCSND 240

Query: 61  FLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLAQSEDFEVKEVELWGFVY 112
             A GGGG FALYLDGDLL G+S   +T+ N CLA + +FE+K VELWGF +
Sbjct: 241 SFAFGGGGGFALYLDGDLLTGTSGPCDTFENHCLAHTPEFEIKNVELWGFTH 292