Jatropha Genome Database

JcCA0150751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150751.10 - phase: 0 
         (219 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g094100.1 SSXT chr01_pseudomolecule_IMGAG_V3 19387163...   157   3e-39
IMGA|Medtr3g123150.1 SSXT chr03_pseudomolecule_IMGAG_V3 30811770...    60   8e-10

>IMGA|Medtr1g094100.1 SSXT chr01_pseudomolecule_IMGAG_V3
           19387163-19389048 E EGN_Mt090430 20090702
          Length = 211

 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 111/207 (53%), Gaps = 10/207 (4%)

Query: 13  AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72
           AAYYPNNVTTDHIQQYLDENKSLILKIVESQN+GKL+ECAENQ+RLQRNLMYLAAIADSQ
Sbjct: 13  AAYYPNNVTTDHIQQYLDENKSLILKIVESQNTGKLTECAENQSRLQRNLMYLAAIADSQ 72

Query: 73  PQPPTMHTQFPSSGIMHPGXXXXXXXXXXXXTPQSLMAARSSMXXXXXXXXXXXXXXXXX 132
           PQPPTM  Q+PSSG+M  G            T Q LMAARSS+                 
Sbjct: 73  PQPPTMPGQYPSSGMMQQGGHYMQAQQAQQMTQQQLMAARSSLMYAQQLQQQQALQSQLG 132

Query: 133 XXXXXXXXXXXXXXXXXNEXXXXXXXXXXXXXXFPDFGRDAGGRGM--GSKQDIXXXXXX 190
                            N               FPDFGR + G G+    KQDI      
Sbjct: 133 MNSSGSQGLHMLHSEGAN-----VGGNSSLGAGFPDFGRSSAGDGLHGSGKQDI---GST 184

Query: 191 XXXXXXXXXXXXXXXETLYLKSADDGN 217
                          ETLYLKS+ DGN
Sbjct: 185 DGRGGSSSGHSGDGGETLYLKSSGDGN 211


>IMGA|Medtr3g123150.1 SSXT chr03_pseudomolecule_IMGAG_V3
          30811770-30815314 E EGN_Mt090430 20090702
          Length = 189

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 20 VTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQ 74
          +TT+ IQ+ L+EN+ LI+KI+E Q  GK SE    QA+LQ NL +LA +AD  PQ
Sbjct: 11 LTTEQIQKCLEENEELIMKILEGQKQGKHSELGPYQAKLQHNLTFLAKLADFGPQ 65