Jatropha Genome Database

JcCA0149621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149621.20 - phase: 2 /partial
         (286 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g095540.1 Peptidase C19, ubiquitin carboxyl-terminal ...   385   e-107
IMGA|Medtr4g106770.3 Peptidase C19, ubiquitin carboxyl-terminal ...   100   1e-21
IMGA|Medtr4g106770.1 Peptidase C19, ubiquitin carboxyl-terminal ...    99   2e-21

>IMGA|Medtr2g095540.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; UBA-like chr02_pseudomolecule_IMGAG_V3
           21847655-21841283 E EGN_Mt090430 20090702
          Length = 606

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/303 (64%), Positives = 222/303 (73%), Gaps = 36/303 (11%)

Query: 15  SVHTDVNLTFCRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRG 74
           S    +  T  ++AGLTSFPDYLVLHMRKFVMEEGWVPKKL            SHMRS+G
Sbjct: 307 STALQMKTTAVKSAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYVDVPDIIDISHMRSKG 366

Query: 75  LQPGEQLLPEGDPSDEVESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTGVEEAMNW 134
            QPGE+LLP+G P ++ +S+  +ANEDIV+QLVSMGFN +HCQKAAINT N GVEEAM W
Sbjct: 367 HQPGEELLPDGVPIED-DSEIPLANEDIVAQLVSMGFNQIHCQKAAINTSNAGVEEAMTW 425

Query: 135 LLSHMDDPDIDVPISQGVLGTEVVDQSKVDTLISFGFQEELARKALKASGGDIEKATDWI 194
           LL+HM+DPDID PI +G  G+E VDQSKVD L+SFGFQ+++ARKAL ASGGDIEKATDWI
Sbjct: 426 LLAHMEDPDIDAPILRG-RGSESVDQSKVDMLLSFGFQDDVARKALIASGGDIEKATDWI 484

Query: 195 FSNPDASVSSDMDATTSSNLPNPDDAGLPDGGGR-------------------------- 228
           FSNPDASV S+MDAT S+    P+DA LPDGGGR                          
Sbjct: 485 FSNPDASV-SNMDATASNTTSGPNDADLPDGGGRLLMVIPEEWTSFHFNFITSTNGCTEF 543

Query: 229 -------YRLFGIVSHIGTSTQCGHYVAHVFKDGRWTIFNDNKVGASVNPPKDMGYLYFF 281
                  YRL GIVSHIGTST CGHYVAH+ KDGRW IFNDNKVGAS+NPPKDMGYLYFF
Sbjct: 544 LSWFPTGYRLMGIVSHIGTSTHCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFF 603

Query: 282 ERL 284
           ERL
Sbjct: 604 ERL 606


>IMGA|Medtr4g106770.3 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2 chr04_pseudomolecule_IMGAG_V3
           23129428-23130985 E EGN_Mt090430 20090702
          Length = 131

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 51/67 (76%)

Query: 219 DAGLPDGGGRYRLFGIVSHIGTSTQCGHYVAHVFKDGRWTIFNDNKVGASVNPPKDMGYL 278
           D  LPDG GRY+L G VSH+G+S   GHY+A+V K  RW +F+DN VGA   PPKDMGYL
Sbjct: 64  DEYLPDGKGRYQLLGFVSHVGSSMDTGHYIAYVRKLDRWVLFDDNIVGAVHRPPKDMGYL 123

Query: 279 YFFERLD 285
           YFFERLD
Sbjct: 124 YFFERLD 130



 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 25 CRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRGLQPGEQLLPE 84
           ++  LTSFP YLVLHM+++VME+G V KKL            S MRS+G QPGE+L  +
Sbjct: 1  MKSVSLTSFPAYLVLHMQRYVMEQG-VLKKLDVSVAVPKILDISGMRSKGRQPGEELYSD 59

Query: 85 GDPSDE 90
             +DE
Sbjct: 60 THVTDE 65


>IMGA|Medtr4g106770.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2 chr04_pseudomolecule_IMGAG_V3
           23127714-23130985 E EGN_Mt090430 20090702
          Length = 321

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 51/67 (76%)

Query: 219 DAGLPDGGGRYRLFGIVSHIGTSTQCGHYVAHVFKDGRWTIFNDNKVGASVNPPKDMGYL 278
           D  LPDG GRY+L G VSH+G+S   GHY+A+V K  RW +F+DN VGA   PPKDMGYL
Sbjct: 254 DEYLPDGKGRYQLLGFVSHVGSSMDTGHYIAYVRKLDRWVLFDDNIVGAVHRPPKDMGYL 313

Query: 279 YFFERLD 285
           YFFERLD
Sbjct: 314 YFFERLD 320



 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 23  TFCRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRGLQPGEQLL 82
           T  ++  LTSFP YLVLHM+++VME+G V KKL            S MRS+G QPGE+L 
Sbjct: 189 TAMKSVSLTSFPAYLVLHMQRYVMEQG-VLKKLDVSVAVPKILDISGMRSKGRQPGEELY 247

Query: 83  PEGDPSDE 90
            +   +DE
Sbjct: 248 SDTHVTDE 255