Jatropha Genome Database

JcCA0149501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149501.20 - phase: 0 /partial
         (106 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g043060.1 Hypothetical plant protein chr02_pseudomole...   125   4e-30

>IMGA|Medtr2g043060.1 Hypothetical plant protein
           chr02_pseudomolecule_IMGAG_V3 12254513-12250514 E
           EGN_Mt090430 20090702
          Length = 423

 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 69/93 (74%)

Query: 14  QESIMPEDKKTKFLESEDSEFEKVIDFYLCSQSDVFVPAISGLFYANVAGKRIASGKTQI 73
           +E+IM   KK KFL SE  E EK IDFY+CS+SDVFVP++ G FY NVAG RI SGK Q+
Sbjct: 331 KENIMSATKKEKFLSSESIELEKAIDFYICSESDVFVPSVPGPFYENVAGMRIVSGKDQV 390

Query: 74  LVPANIPGTSASVTNHFSPYISKKNHLAYSCFC 106
           +VP+ I    AS + H SPY++KKNH+AY CFC
Sbjct: 391 IVPSEIVSPEASASEHMSPYVTKKNHIAYKCFC 423