Jatropha Genome Database

JcCA0149441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.10 - phase: 0 /pseudo/partial
         (315 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g112550.1 Helix-loop-helix DNA-binding chr08_pseudomo...   228   3e-60
IMGA|Medtr8g112210.1 Helix-loop-helix DNA-binding chr08_pseudomo...   122   3e-28

>IMGA|Medtr8g112550.1 Helix-loop-helix DNA-binding
           chr08_pseudomolecule_IMGAG_V3 25287699-25285553 F
           EGN_Mt090430 20090702
          Length = 224

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 141/201 (70%), Gaps = 10/201 (4%)

Query: 119 KGKVPKGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIE 178
           +GKVPK IHKAEREK+KRE               ++PNNGKASIL EA++LLKD L QI+
Sbjct: 24  QGKVPKRIHKAEREKMKREHLNELFLDLANALDLSEPNNGKASILIEASRLLKDLLCQIQ 83

Query: 179 CLKKENASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKPDLNAPPP-EF 237
            LKKEN SLLSESHYVT EKNELKEENS L+TQIE LQ E++AR+ QSKPDLNAPP  E 
Sbjct: 84  SLKKENVSLLSESHYVTMEKNELKEENSSLETQIEKLQGEIQARIAQSKPDLNAPPQLEL 143

Query: 238 EQPELTSHFPGDSLRLPTADASLQQTSAVFVIPFHHDLQTYSVTASN--------VSKPH 289
           E PE T+ F G S +LPT D +LQQ   V V+PF  DLQ      +         +SKPH
Sbjct: 144 ESPEQTT-FSGQSFQLPTVDPTLQQGPTVLVVPFRPDLQAAYPAPTEITPNPPLVISKPH 202

Query: 290 ARYPNPADSWPSQLLGEQVTA 310
           ARYP PADSWPSQLLGEQ T+
Sbjct: 203 ARYPTPADSWPSQLLGEQPTS 223


>IMGA|Medtr8g112210.1 Helix-loop-helix DNA-binding
           chr08_pseudomolecule_IMGAG_V3 25123592-25121789 F
           EGN_Mt090430 20090702
          Length = 150

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 72/95 (75%)

Query: 119 KGKVPKGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIE 178
           +GKVPK IHKAEREK+KRE               ++PNNGKASIL EA++LLKD L QI+
Sbjct: 24  QGKVPKRIHKAEREKMKREHLNELFLDLANALDLSEPNNGKASILIEASRLLKDLLCQIQ 83

Query: 179 CLKKENASLLSESHYVTTEKNELKEENSVLQTQIE 213
            LKKEN SLLSESHYVT EKNELKEENS L+TQIE
Sbjct: 84  SLKKENVSLLSESHYVTMEKNELKEENSSLETQIE 118