Jatropha Genome Database

JcCA0148631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148631.20 - phase: 2 /partial
         (109 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g125610.1 Peroxisomal membrane anchor protein (Pex14p...    46   6e-06

>IMGA|Medtr8g125610.1 Peroxisomal membrane anchor protein (Pex14p)
           chr08_pseudomolecule_IMGAG_V3 29342563-29349913 E
           EGN_Mt090430 20090702
          Length = 523

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 7/67 (10%)

Query: 44  RRPKPSVQKEQLADDQPVSHSTDATDELQRITKISESGGAVE---INGGESEVNSSEIKE 100
           RRPK +VQKEQ +D+Q V  S+D ++    I K SES GAVE   +  GE +V    ++E
Sbjct: 461 RRPKQAVQKEQASDNQSVVQSSDISNGEHEIPKPSESEGAVEGSNVGSGEIQV----LQE 516

Query: 101 DQEHSYE 107
           D E +YE
Sbjct: 517 DHETTYE 523