Jatropha Genome Database

JcCA0148631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148631.10 - phase: 0 /partial
         (241 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g125620.1 1-deoxy-D-xylulose 5-phosphate reductoisome...   323   7e-89

>IMGA|Medtr8g125620.1 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase; ; chr08_pseudomolecule_IMGAG_V3
           29353661-29358146 E EGN_Mt090430 20090702
          Length = 469

 Score =  323 bits (827), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 174/250 (69%), Positives = 192/250 (76%), Gaps = 9/250 (3%)

Query: 1   MALNLLSPAEIKAISFLDSTKSNQL-PKLPGSFSLKRKD----LGRKVQCSXXXXXX--- 52
           MALNL SPAE+K+  F D  KSN+  PK PG  +LKRK+     G +V CS         
Sbjct: 1   MALNLYSPAELKSGFFTDPLKSNRFTPKFPGGVALKRKENGTASGTRVYCSVQSTSGPPP 60

Query: 53  XXXXXXXXXXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPNKFKVVALAAGSNVTLLA 112
                     G KTW+GPKPISIVG TGSIGTQTLDIVAENP+KF+VVALAAGSN+TLL 
Sbjct: 61  AWPGRAIPELGNKTWEGPKPISIVGCTGSIGTQTLDIVAENPDKFRVVALAAGSNITLLV 120

Query: 113 DQVKTFKPQLVAVRNESLVDELKEALADVEEKPEIIPGEQGIVEVARHPDAVSVVTGIVG 172
           DQVK FKPQLVAVRNESL+ EL+EAL DVEEKPEIIPGEQG++EVARHPDAV+VVTGIVG
Sbjct: 121 DQVKRFKPQLVAVRNESLLAELQEALKDVEEKPEIIPGEQGVIEVARHPDAVTVVTGIVG 180

Query: 173 CAGLKPTVAAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQ-CIQG 231
           CAGLKPTVAAIEAGKDI LANKETLIAGGPFVLPLA K+NVK           F+ CIQG
Sbjct: 181 CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLARKHNVKYFLLIPNILLFFRVCIQG 240

Query: 232 LPEGALRRII 241
           L EGALRR+I
Sbjct: 241 LTEGALRRVI 250