Jatropha Genome Database

JcCA0148271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148271.30 + phase: 0 
         (136 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g143580.1 Pentatricopeptide repeat chr01_pseudomolecu...   118   7e-28

>IMGA|Medtr1g143580.1 Pentatricopeptide repeat
           chr01_pseudomolecule_IMGAG_V3 31747847-31742900 E
           EGN_Mt090430 20090702
          Length = 553

 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 78/88 (88%), Gaps = 1/88 (1%)

Query: 47  LEVVAKGMLSQRKFMQKRRKVEVFKDAADEADQKNWRGVMKQIEETGSAVAVLKSKRITQ 106
           L+V+ KGML+ RKFMQ++RK+ VFKDAADEA+QKNW  +MK I+ETGSAV+VL S+++ +
Sbjct: 40  LKVMCKGMLTPRKFMQRKRKMVVFKDAADEAEQKNWWRLMKLIDETGSAVSVLNSEKM-K 98

Query: 107 NQDLPKDLVLGTLVRFQQLKKWNLVSEV 134
           NQ +PK LV+GTL+RF+QLKKWNLV+E+
Sbjct: 99  NQTIPKALVVGTLMRFKQLKKWNLVAEI 126