Jatropha Genome Database

JcCA0147671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147671.20 + phase: 0 
         (236 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g089770.1 CoA-binding chr06_pseudomolecule_IMGAG_V3 1...   298   2e-81

>IMGA|Medtr6g089770.1 CoA-binding chr06_pseudomolecule_IMGAG_V3
           18694209-18699277 E EGN_Mt090430 20090702
          Length = 323

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 143/161 (88%), Positives = 147/161 (91%)

Query: 45  VFVDKNTRLICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 104
           VFVDK+TR+ICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFN+VAEAK 
Sbjct: 29  VFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKT 88

Query: 105 ETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNKQSKTRLIG 164
           ETKANASVIYVPPPF            LDLVVCITEGIPQHDMVRVKAALN+QSKTRLIG
Sbjct: 89  ETKANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIG 148

Query: 165 PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 205
           PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV
Sbjct: 149 PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 189