Jatropha Genome Database

JcCA0147671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147671.10 + phase: 2 /partial
         (75 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g089790.1 Oligosaccharyl transferase, STT3 subunit ch...    82   8e-17
IMGA|Medtr1g143540.1 Oligosaccharyl transferase, STT3 subunit ch...    55   1e-08

>IMGA|Medtr6g089790.1 Oligosaccharyl transferase, STT3 subunit
           chr06_pseudomolecule_IMGAG_V3 18717789-18723925 E
           EGN_Mt090430 20090702
          Length = 727

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/37 (97%), Positives = 36/37 (97%)

Query: 1   YDRARGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKP 37
           YDRARGVEIGNKDIKLEYLEEAFTT NWIVRIYKVKP
Sbjct: 686 YDRARGVEIGNKDIKLEYLEEAFTTQNWIVRIYKVKP 722


>IMGA|Medtr1g143540.1 Oligosaccharyl transferase, STT3 subunit
           chr01_pseudomolecule_IMGAG_V3 31722163-31730577 E
           EGN_Mt090430 20090702
          Length = 773

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 1   YDRARGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKP 37
           YDR R  EIG K  KL + EE FTT +W+VRIYK+KP
Sbjct: 705 YDRVRRTEIGKKYFKLTHFEEVFTTHHWMVRIYKLKP 741