Jatropha Genome Database

JcCA0147251.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147251.30 - phase: 0 /TE/partial
         (84 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g165720.1 WD-40 repeat-containing protein MSI1, putat...   142   6e-35
IMGA|Medtr4g098470.1 WD-40 repeat-containing protein MSI2, putat...    87   2e-18
IMGA|Medtr2g045840.1 WD40-like chr02_pseudomolecule_IMGAG_V3 127...    53   4e-08
IMGA|Medtr2g121300.1 WD40-like chr02_pseudomolecule_IMGAG_V3 287...    52   8e-08

>IMGA|Medtr4g165720.1 WD-40 repeat-containing protein MSI1, putative
           chr04_pseudomolecule_IMGAG_V3 41805235-41809409 E
           EGN_Mt090430 20090702
          Length = 423

 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 70/76 (92%), Gaps = 1/76 (1%)

Query: 1   LLTWSFFCRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 60
           L+ W    RIDEEQ+PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWV+ASVAEDNILQ
Sbjct: 342 LMVWDL-SRIDEEQSPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQ 400

Query: 61  IWQMEENIYHDEDDMP 76
           IWQM ENIYHDEDDMP
Sbjct: 401 IWQMAENIYHDEDDMP 416


>IMGA|Medtr4g098470.1 WD-40 repeat-containing protein MSI2, putative
           chr04_pseudomolecule_IMGAG_V3 21181740-21184225 E
           EGN_Mt090430 20090702
          Length = 405

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 1   LLTWSFFCRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 60
           L+ W    RI +E    D E GPPELLF HGGH  KISDFSWN  + WVI+SVAEDN   
Sbjct: 323 LMVWDL-NRIGDELIEGDEEGGPPELLFSHGGHKGKISDFSWNQNQPWVISSVAEDNSCH 381

Query: 61  IWQMEENIYHDEDD 74
           +WQM E+IY+D DD
Sbjct: 382 VWQMAESIYNDGDD 395


>IMGA|Medtr2g045840.1 WD40-like chr02_pseudomolecule_IMGAG_V3
           12732753-12725488 F EGN_Mt090430 20090702
          Length = 500

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 21  DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQIWQMEENIYHDED 73
           + PP L F H GH  K+ DF WN  + W + SV++D         LQIW+M + +Y  ED
Sbjct: 419 NSPPGLFFQHAGHRDKVVDFHWNAHDPWTLVSVSDDCESTGGGGTLQIWRMSDLLYRPED 478

Query: 74  DM 75
           ++
Sbjct: 479 EV 480


>IMGA|Medtr2g121300.1 WD40-like chr02_pseudomolecule_IMGAG_V3
           28755619-28762221 E EGN_Mt090430 20090702
          Length = 479

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 7/59 (11%)

Query: 24  PELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQIWQMEENIYHDEDDM 75
           P L F H GH  K+ DF WN  + W I SV++D         LQIW+M + IY  ED++
Sbjct: 391 PGLFFRHAGHRDKVVDFHWNASDPWTIVSVSDDCASTGGGGTLQIWRMMDLIYRPEDEV 449