Jatropha Genome Database

JcCA0146681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146681.10 + phase: 0 
         (248 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase chr05_pseudom...   322   9e-89
IMGA|Medtr5g022580.1 hypothetical protein chr05_pseudomolecule_I...    55   4e-08

>IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase
           chr05_pseudomolecule_IMGAG_V3 8835936-8840655 E
           EGN_Mt090430 20090702
          Length = 483

 Score =  322 bits (826), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 162/222 (72%), Positives = 185/222 (83%), Gaps = 4/222 (1%)

Query: 7   STHLYRPP-SLSKTRTYPLNQNPFLKIPILPLKFTRTSSKPFSLKAVLSQNQANTFTQKT 65
            THL     SL KT  +   +NP  +  ILPLK +++++KP  L+AVLS+    T   K 
Sbjct: 3   GTHLLSHSCSLPKTFNHSFTKNPLPQNFILPLK-SKSTTKPIVLRAVLSKTPPET--TKI 59

Query: 66  TPFKHCFTKPSDGFLYCENLKVQDIMENVEKRPFYLYSKPQITRNVEAYRDALEGLNSII 125
           T F HCF+K  DG+L+CENLKV +IME+VEKRPFYLYSKPQITRNVEAY+DALEGL SII
Sbjct: 60  TNFDHCFSKSEDGYLHCENLKVAEIMESVEKRPFYLYSKPQITRNVEAYKDALEGLTSII 119

Query: 126 GYAIKANNNLKVLEHLRQLGCGAVLVSGNELRLALRAGFDPKRCIFNGNGKLLEDLVLAA 185
           GYAIKANNN K+LEHLR LGCGAVLVSGNEL+LALRAGFDP RCIFNGNGK+LEDLVLAA
Sbjct: 120 GYAIKANNNYKILEHLRSLGCGAVLVSGNELKLALRAGFDPTRCIFNGNGKILEDLVLAA 179

Query: 186 QEGVFVNVDSEFDLENIVAAARIAGEKVNVLLRINPDVDPQV 227
           + GVFVN+DSEFDLENIVAAARIAG++VNVLLRINPDVDPQV
Sbjct: 180 EAGVFVNIDSEFDLENIVAAARIAGKRVNVLLRINPDVDPQV 221


>IMGA|Medtr5g022580.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 8830696-8831587 E
           EGN_Mt090430 20090702
          Length = 80

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 13/80 (16%)

Query: 35  LPLKFTRTSSKPFSLKAVLSQNQANTFTQKTTPFKHCFTKPSDGFLYCENLKVQDIMENV 94
           LP  +T    KPF+ K     +  +  T   TP+         G+LYCE+ +V +IME +
Sbjct: 14  LPKSYTLIPQKPFTPKP----HSPSQTTHPQTPY---------GYLYCESRRVDEIMELI 60

Query: 95  EKRPFYLYSKPQITRNVEAY 114
            K+ FYLYSKP ITR  + Y
Sbjct: 61  GKQSFYLYSKPHITRIFQTY 80