Jatropha Genome Database
- JcCA0146311.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0146311.10 + phase: 0 /TE/pseudo/partial
(334 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 120 8e-28
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 105 3e-23
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 101 6e-22
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 99 3e-21
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 99 3e-21
IMGA|Medtr7g045780.1 Retrotransposon gag protein chr07_pseudomol... 97 2e-20
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 96 2e-20
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 91 1e-18
IMGA|Medtr7g123950.1 Retrotransposon gag protein chr07_pseudomol... 87 1e-17
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 85 4e-17
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 85 5e-17
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 84 7e-17
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 84 1e-16
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 84 1e-16
IMGA|Medtr3g019580.1 Retrotransposon gag protein chr03_pseudomol... 84 1e-16
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 82 5e-16
IMGA|Medtr6g069740.1 Zinc finger, C4-type chr06_pseudomolecule_I... 77 1e-14
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 74 1e-13
IMGA|Medtr7g126870.1 hypothetical protein chr07_pseudomolecule_I... 72 3e-13
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 64 9e-11
IMGA|Medtr3g083340.1 Integrase, catalytic region, related chr03_... 64 1e-10
IMGA|Medtr3g083290.1 Integrase, catalytic region, putative chr03... 64 1e-10
IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H... 60 2e-09
IMGA|Medtr8g005190.1 Integrase, catalytic region, related chr08_... 57 1e-08
IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related chr0... 53 2e-07
IMGA|Medtr3g080970.1 Retrotransposon gag protein chr03_pseudomol... 53 2e-07
IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG... 49 4e-06
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 165/379 (43%), Gaps = 51/379 (13%)
Query: 1 PTISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSEL 60
P+I+ + ++ +W+ + + G+ + +L Q++ KQGD I YF +L L
Sbjct: 95 PSIAHSVVFIEHAIDMWNDLKDRFMR-GDRIRVAQLHQEIANLKQGDHKITDYFTELRGL 153
Query: 61 WQKLDYYLDFQ-----ARCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDPF 114
W++LD Y CT A + K E RV FL GLN EY + QVL DP
Sbjct: 154 WEELDQYRPMPQCTCPMPCTCLAMRNAKGFRAEDRVIQFLIGLNEEYQGVASQVLLMDPM 213
Query: 115 PSLRQAYSFLQQEETRRSAMV-----HRSTIDKEGLI-ANSAREHIQAAKSSSS------ 162
P + + +S + Q+E + V + S D GL+ A + ++ + +S
Sbjct: 214 PPINRVFSLVMQQERKLQYAVVSHVQNTSLEDNTGLVNAVNGQKQFGRGRGGTSYQGRGR 273
Query: 163 -----DRDQLFCDYCSKNRHTKEFCWKLHG-PPTKGRGGKS-----------------GA 199
+ + FC +C + HT E C+K HG PP GRGG + G+
Sbjct: 274 GNGRGNGNGRFCTFCERTNHTVETCYKKHGYPPNWGRGGGNSYTNMVDAEDTESKINMGS 333
Query: 200 LSEEPSTAR-SFSDKEIQSLKR-------XXXXXXXXXXXXXXXNFLNSGNAFLTFLAKI 251
S A + + + Q+L + S + +F +K
Sbjct: 334 TSRNDENAGITLTKDQYQNLMSLLEKNNLETKCSANVVKGSNSISLFESKSLLASFDSKQ 393
Query: 252 AKPSWVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSL 311
P W++D+GA HT + F +Y K + T +++ +GS++ G + + ++ +
Sbjct: 394 NDPGWIVDTGATHHTCYDLNWFTSYSKIE-TINVNLPNGSVIEACYIGQVKLSKDLSIDN 452
Query: 312 VLHVPRLPINLLYVSLITK 330
VL++P+ +NL+ VS + +
Sbjct: 453 VLYLPKFAVNLISVSKLCR 471
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 164/364 (45%), Gaps = 41/364 (11%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + D+ ++W +S+ + + LR ++ KQG + YF ++ LW
Sbjct: 92 SIAQTIVFCDSALEVWLDLKERFSKI-DRIRIANLRSNINNLKQGSKFVLDYFTEIKSLW 150
Query: 62 QKLDYYLDFQA-----RCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDPFP 115
++L + C A++V K E ++ FL GLN+++ +R QVL DP P
Sbjct: 151 EELSSHRPIPNCSCIHPCRCAASKVAKIHRNEDQIMQFLTGLNDQFSVVRTQVLLLDPLP 210
Query: 116 SLRQAYSFLQQEETRRSAMVHRSTIDKEGLIANSA--REHIQAAKSSSSDRDQLFCDYCS 173
S+ + YS + QEE+ +++ S + N+ R+ KS S++ C +C+
Sbjct: 211 SMNKVYSLVVQEESNHASITSLSVSTDTSIQINATENRKPQGRGKSFYSNKPTRLCTFCN 270
Query: 174 KNRHTKEFCWKLHGPPTKGRGGKS-GALSEE--------------PSTARS--FSDKE-- 214
+ HT +FC+ HG P + S A S+E P+++ S FS ++
Sbjct: 271 RTNHTVDFCYLKHGYPNVNKPSSSVNAASQEDSENGTISSSGLGTPASSPSAGFSQEQLA 330
Query: 215 --IQSLKRXXXXXXXXXXXXXXXNFLNSG-----NAFLTFLAKIAK-----PSWVIDSGA 262
+ L++ N + S ++ LA ++ P W+IDSGA
Sbjct: 331 QLVSMLQQSNLVVSAPSPSQVTSNHIASASISTPDSSKGILASVSSLTSKPPFWLIDSGA 390
Query: 263 NKHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVLHVPRLPINL 322
N+H I F ++++ + + + +G+ V G++ S LS VL+ P +NL
Sbjct: 391 NEHICCDIASFSSFYRIKPV-YVSLPNGNSVLAHFAGNVFFNSKFHLSHVLYSPHFTLNL 449
Query: 323 LYVS 326
+ V+
Sbjct: 450 ISVA 453
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 149/339 (43%), Gaps = 45/339 (13%)
Query: 36 LRQKVHETKQGDLTIAQYFAKLSELWQKLDYY-------LDFQARCTDDATQVQKXIEVE 88
LR ++ KQGD ++ YF + LW++L+ + + RC ++ + + +E
Sbjct: 129 LRSSINNLKQGDKSVLDYFTSIKSLWEELNSHRPMPMCTCPYPCRC--ESMRAARDFRME 186
Query: 89 -RVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIA 147
+V FL GLN+ + ++ QVL DP PS+ + YS + QEE+ ++ + ++
Sbjct: 187 DQVIQFLTGLNDSFSVVKTQVLLIDPLPSINKVYSMVIQEESNIIPPTSLASNEDSSILV 246
Query: 148 NS--AREHIQAAKSSS---SDRDQLFCDYCSKNRHTKEFCWKLHGPPTKGRG-GKSGALS 201
N+ AR+ KSS S + +C +C +N HT E+C+ H P + S A++
Sbjct: 247 NASDARKPFLRGKSSGTSQSKNNSRYCTFCRRNNHTVEYCYLKHDFPNANKPTASSNAVT 306
Query: 202 EEPSTARSFSDKE-----------------IQSLKRXXXXXXXXXXXXXXXN-------- 236
E + S + + L++ N
Sbjct: 307 SEHAVDSHTSSEGTSSSSQTGLTQEQYVHLVSLLQQSSLVPSATPPNPASTNHVATSFPS 366
Query: 237 ---FLNSGNAFLTFLAKIAKPSWVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLV 293
F + N + + W+IDSGAN+H S+ F +Y++ + +++ +GS V
Sbjct: 367 SIDFTSGINTIFSCSLHVPSDHWLIDSGANEHICSSLHLFHSYYRIKPI-CVNLPNGSSV 425
Query: 294 PIVGTGSIDCTSNIKLSLVLHVPRLPINLLYVSLITKHL 332
+ G++ + + ++ VL+ P + L+ VS I + L
Sbjct: 426 IVQYAGTVVFSPHFHITHVLYSPSFKVYLISVSKICQSL 464
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 40/359 (11%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + L+ +W+ +SQ G++ + EL+ ++ KQ ++ ++F L LW
Sbjct: 107 SIAQSIVFLENAIDVWNELKERFSQ-GDFIRISELQCEIFSLKQDSRSVTEFFTALKVLW 165
Query: 62 QKLDYYLD-------FQARCTDDATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPF 114
++L+ YL + C + E+ R FL GLN+ +D +R Q+L +P
Sbjct: 166 EELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNPL 225
Query: 115 PSLRQAYSFLQQEET--RRSAMVHRSTIDKEGLIANSAREHIQAAKSSSSDRDQLFCDYC 172
P++ + +S + Q E + S V STI + R +S+ R C +C
Sbjct: 226 PTINKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRS---CSFC 282
Query: 173 SKNRHTKEFCWKLHG-PPTKGRGGKS-----------------------GALSEEPSTAR 208
++ HT + C++ HG PP G + G + EPS
Sbjct: 283 GRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGI 342
Query: 209 SFSDKE-IQSLKRXXXXXXXXXXXXXXXNFLNSGNAFLTF-LAKIAKPSWVIDSGANKHT 266
+ E + +L + N + SG ++ + + +W++DSGA+ H
Sbjct: 343 TKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHI 402
Query: 267 TGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVLHVPRLPINLLYV 325
SIK F +Y I + +G++ +G+++ + + VL+V +NLL V
Sbjct: 403 CSSIKFFDSYAPIIPV-HIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSV 460
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 162/369 (43%), Gaps = 42/369 (11%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + D +W+ +S+ + + LR ++ +QG ++ YF ++ LW
Sbjct: 73 SIAQTIVFHDNAFDVWEDLKERFSKV-DRIRIARLRSSLNTLRQGAKSVLDYFTEMKALW 131
Query: 62 QKL-------DYYLDFQARCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDP 113
++L + + FQ +C DA V K VE ++ FL GLN ++ ++ QVL DP
Sbjct: 132 EELHSHRPLPNCHCPFQCKC--DAVTVPKSYRVEDQIIQFLTGLNEQFSVVKTQVLLMDP 189
Query: 114 FPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIANSAREH-IQAAKSSSSDRDQLFCDYC 172
P+L + +S + Q+E+ +++ ++ + N+ E Q + ++ C +C
Sbjct: 190 LPTLNKVFSLVIQKESNNASVPAMVNLEDSSVSINAYDERKSQGRGKGAYNKPTRHCTFC 249
Query: 173 SKNRHTKEFCWKLHGPPTKGR-GGKSGALSEEPSTARSFS----------DKEIQSLKRX 221
+K HT +FC++ HG P + ++ A S + + S ++ + L++
Sbjct: 250 NKTNHTVDFCYQKHGFPNANKPNSQANASSSDVAEVDGSSGVSGLSQDKMEQLVALLQQA 309
Query: 222 XXXXXXXXXXXXXXNFL------------------NSGNAFLTFLAKIAKPSWVIDSGAN 263
N + ++G T + ++ W++DSGAN
Sbjct: 310 NLIPSSSASSGSVTNHIAAPQVSSCYTTSSSLTPTSAGIINSTTCSSLSNSYWLVDSGAN 369
Query: 264 KHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVLHVPRLPINLL 323
+H + F +Y + + + DGS+V + G I+ + L+ VL+ +NL+
Sbjct: 370 EHICRDLNLFTSYHAISPS-IVTLPDGSIVTVTHAGYINFSPQFYLTNVLYSSSFRLNLM 428
Query: 324 YVSLITKHL 332
V + + L
Sbjct: 429 SVHKVCESL 437
>IMGA|Medtr7g045780.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 11034924-11036399 H
EGN_Mt090430 20090702
Length = 491
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 158/377 (41%), Gaps = 49/377 (12%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + D +W+ +S+ + + L ++ KQG T+++YF ++ LW
Sbjct: 49 SIAQNIVFHDYALDVWEDLKERFSK-ADRIRISTLCSSINNLKQGGKTVSEYFTEMRSLW 107
Query: 62 QKLDYYLDFQA-----RCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDPFP 115
++L+ + RC +A+ VE ++ FL GLN+++ ++ Q+L DP P
Sbjct: 108 EELNSHRPLPNCSCIHRCCCEASTRAHVYRVEDQIMQFLIGLNDQFSIVKTQILLMDPLP 167
Query: 116 SLRQAYSFLQQEETRRSAMVHRSTIDKEGLIANSAREHIQAAKS----SSSDRDQLFCDY 171
SL + YS + QEE+ + ++ D+ ++ N A + S+ C +
Sbjct: 168 SLNKVYSLVIQEESNHAPILSLPA-DESNILVNVADSKKSYGRGKGYYSNQKNSSRHCTF 226
Query: 172 CSKNRHTKEFCWKLHGPPTKGRGGKSGALSEEPSTARSFSDKEIQS-------------- 217
C++ HT + C+ HG P G S A ++ + + + + +
Sbjct: 227 CNRTNHTIDTCYLKHGFPNANIPGNSTASTQGSTNSVTVESGNVSNTEHGNGDSGFSISQ 286
Query: 218 ---------LKRXXXXXXXXXXXXXXXNFLNSG-------------NAFLTFLAKIAKPS 255
L++ N L + +AF + P
Sbjct: 287 DRYEHLVNLLQQATLLSSAVSPSVSTSNQLTTSPSMPIVPYQSGIQSAFSCSFHINSLPI 346
Query: 256 WVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVLHV 315
W+IDSGAN H S HF ++K + + + +G+ + + G++ T ++ L+ VL+
Sbjct: 347 WIIDSGANDHVCFSKSHFTAFYKIKPV-LVTLPNGNSIYVHYAGNVYFTPHLYLNNVLYS 405
Query: 316 PRLPINLLYVSLITKHL 332
+NL+ VS + L
Sbjct: 406 LEFKVNLISVSKMCDSL 422
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 12/199 (6%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + D+ ++W +S+T + + LR ++ KQG ++ YF +L LW
Sbjct: 95 SIAQTVVFCDSASEVWQDLHERFSKT-DRIRIATLRSSINILKQGTKSVLDYFTELKGLW 153
Query: 62 QKLDYYLDFQA-----RCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDPFP 115
++ +L C +AT+V K E ++ FL GLN+++ ++ Q+L DP P
Sbjct: 154 EEFSSHLPIPNCICVHPCRCEATRVAKTHRTEDQIMQFLTGLNDQFSVVKTQILLLDPLP 213
Query: 116 SLRQAYSFLQQEETRRSAMVHRSTIDKEGLIANSA-----REHIQAAKSSSSDRDQLFCD 170
SL + YS + QEE+ S++ S D + N++ + + S S+++ FC
Sbjct: 214 SLNKVYSMVIQEESNNSSIPSVSVSDDSNIQLNASDARNFQPRGKGPSSGSNNKPTRFCS 273
Query: 171 YCSKNRHTKEFCWKLHGPP 189
+C + HT +FC++ HG P
Sbjct: 274 FCKRTNHTVDFCYQKHGYP 292
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 13/202 (6%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I+ + DT ++W +S+ + + LR ++ KQG T+ YF ++ LW
Sbjct: 91 SIAPTVVFCDTALEVWLDLKERFSKI-DRIRIANLRSSINNLKQGAKTVLDYFTEMKSLW 149
Query: 62 QKLDYYLDF-------QARCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDP 113
++L + Q RC A+++ K E ++ FL LN+++ +R QVL DP
Sbjct: 150 EELSSHRPIPNCVCVHQCRCL--ASRIAKTHRNEDQIMQFLTSLNDQFSVVRTQVLLLDP 207
Query: 114 FPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIANS--AREHIQAAKSSSSDRDQLFCDY 171
PSL + YS + QEE+ +++ S D + N+ R + KS S + C +
Sbjct: 208 LPSLNKVYSLVVQEESNHASLPSLSVADDTSIQINATDTRRFQRRGKSYSQPKPTRLCTF 267
Query: 172 CSKNRHTKEFCWKLHGPPTKGR 193
C++ HT +FC+ HG P +
Sbjct: 268 CNRTNHTVDFCYLKHGFPNVNK 289
>IMGA|Medtr7g123950.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 29015812-29013196 E
EGN_Mt090430 20090702
Length = 302
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Query: 1 PTISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSEL 60
P I+R + DT +W +SQ G+ ++ Y++RQ++ E +QG L I+ Y+ KL L
Sbjct: 111 PDIARSVIFSDTAAAVWSDLHDRFSQ-GDESRIYQIRQEISECRQGSLLISDYYTKLKSL 169
Query: 61 WQKLDYYLDFQARCTDDATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQA 120
W +L Y + D +V E E+V FL GLN Y Q+R +L +P P R+
Sbjct: 170 WDELGSYQEPITCSCDMLKKVAVREEKEKVMQFLMGLNESYSQVRGSILMMNPLPDTRKV 229
Query: 121 YSFLQQEETRRSAMVHRST 139
+ + Q+E + ++ R T
Sbjct: 230 HGLILQQERQMEVVIRRET 248
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + D +W+ +S+ + + LR ++ KQG T+++YF ++ LW
Sbjct: 49 SIAQTIVFHDYASDVWEDLKERFSK-ADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLW 107
Query: 62 QKLDYYLDF-------QARCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDP 113
++L+ + Q RC +A+ + VE ++ FL GLN+++ ++ Q+L DP
Sbjct: 108 EELNSHRPLPNCSCVHQCRC--EASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDP 165
Query: 114 FPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLI-ANSAREHIQAAKS--SSSDRDQLFCD 170
PSL + YS + QEE+ + ++ T + L+ A +++ K + C
Sbjct: 166 LPSLNKVYSLVIQEESNHTPILSLPTEESNILVNATDSKKSYGRGKGYYGNQKNSSRHCT 225
Query: 171 YCSKNRHTKEFCWKLHGPPTKGRGGKSGALSE 202
+C+++ HT + C+ HG P + S L+
Sbjct: 226 FCNRSNHTIDTCYLKHGFPHPNKSANSNTLTH 257
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 254 PSWVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVL 313
PSW+IDSGAN H S HF +++K + + + +G+ + + G++ T + L+ VL
Sbjct: 349 PSWIIDSGANDHVCFSKTHFTSFYKIKPV-LVTLPNGTSIYVHYAGNVHFTPYLHLTHVL 407
Query: 314 HVPRLPINLLYVSLITKHL 332
+ P +NL+ VS I L
Sbjct: 408 YSPEFKVNLISVSKICDSL 426
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + D +W+ +S+ + + LR ++ KQG T+++YF ++ LW
Sbjct: 49 SIAQTIVFHDYASDVWEDLKERFSK-ADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLW 107
Query: 62 QKLDYYLDF-------QARCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDP 113
++L+ + Q RC +A+ + VE ++ FL GLN+++ ++ Q+L DP
Sbjct: 108 EELNSHRPLPNCSCVHQCRC--EASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDP 165
Query: 114 FPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLI-ANSAREHIQAAKS--SSSDRDQLFCD 170
PSL + YS + QEE+ + ++ T + L+ A +++ K + C
Sbjct: 166 LPSLNKVYSLVIQEESNHTPILSLPTEESNILVNATDSKKSYGRGKGYYGNQKNSSRHCT 225
Query: 171 YCSKNRHTKEFCWKLHGPPTKGRGGKSGALSE 202
+C+++ HT + C+ HG P + S L+
Sbjct: 226 FCNRSNHTIDTCYLKHGFPHPNKSANSNTLTH 257
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 254 PSWVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVL 313
PSW+IDSGAN H S HF +++K + + + +G+ + + G++ T + L+ VL
Sbjct: 349 PSWIIDSGANDHVCFSKTHFTSFYKIKPV-LVTLPNGTSIYVHYAGNVHFTPYLHLTHVL 407
Query: 314 HVPRLPINLLYVSLITKHL 332
+ P +NL+ VS I L
Sbjct: 408 YSPEFKVNLISVSKICDSL 426
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 36 LRQKVHETKQGDLTIAQYFAKLSELWQKLDYY-------LDFQARCTDDATQVQKXIEVE 88
LR K++ KQG ++ +YF ++ LW++L+ + RC A + + +E
Sbjct: 123 LRSKINNMKQGFKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCA--AMREARCYRLE 180
Query: 89 -RVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIA 147
+V FL GLN++++ ++ QVL DP PS+ + YS + QEE+ ++ S+I++ +
Sbjct: 181 DQVIQFLTGLNDQFNVVKTQVLMLDPLPSINKVYSLVVQEESNNLSLT--SSINEPFSVV 238
Query: 148 NSAREHIQAAKS---SSSDRDQLFCDYCSKNRHTKEFCWKLHGPP 189
N+ + SS R C +C K HT E+C++ HG P
Sbjct: 239 NATNSRKPQGRGRGYSSGFRPPRQCTFCGKTNHTVEYCYQKHGHP 283
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 135/312 (43%), Gaps = 46/312 (14%)
Query: 9 LLDTTKKIWD-AASLTYSQTGNYAQ-RYE---------LRQKVHETKQGDLTIAQYFAKL 57
L D + +W+ SL +S N Q R+ L ++ KQG + +YF +L
Sbjct: 46 LDDLNRSVWERCNSLIHSWILNSLQERFSKVDRVRISSLCTTINNLKQGTKFVLEYFTEL 105
Query: 58 SELWQKLDYYLDFQA-----RCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGR 111
LW++L+ + C ++ + + +E ++ FL GLN+ + ++ QV+ +
Sbjct: 106 KSLWEELNSHCPMPMCTCPHPCRCESMRSARNFRLEDQIIQFLTGLNDNFGVVKTQVVIQ 165
Query: 112 DPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIANS--AREHIQAAKSSSSDR----D 165
+ S+ + YS + QEE+ S + S+I+ ++ N+ AR+ K +S +
Sbjct: 166 E---SINKIYSLVIQEESNNSVVTASSSIEDSNILVNASDARKPFGRGKLNSGSHPPKNN 222
Query: 166 QLFCDYCSKNRHTKEFCWKLHGPPTKGRG-GKSGALSEE--PSTARSFSDKEI------- 215
+C +C K HT EFC++ HG P +G G + A++ E P + S + +I
Sbjct: 223 SKYCSFCHKTNHTLEFCYQKHGFPNANKGSGSTNAVNSEGVPESQGSSAISQIGLTQEQY 282
Query: 216 ----QSLKRXXXXXXXXXXXXXXXNFLNSG------NAFLTFLAKIAKPSWVIDSGANKH 265
L++ N + S N + W+IDSGAN+H
Sbjct: 283 VHLVSLLQQSSLIIPAPPITSANTNHIISEPSYAGINTIFPCCLHVKSNYWLIDSGANEH 342
Query: 266 TTGSIKHFLTYF 277
S+ +++
Sbjct: 343 ICSSLSLLHSFY 354
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 2 TISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELW 61
+I++ + DT ++W +S+ + + LR ++ KQG ++ +YF +L LW
Sbjct: 91 SIAQTVVFYDTAYEVWQDLHERFSK-ADRIRIANLRSSINNLKQGAKSVLEYFTELKSLW 149
Query: 62 QKLDYYLDFQA-----RCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDPFP 115
++L + + C DAT+V K E ++ FL GLN+ + ++ QVL +P P
Sbjct: 150 EELSSHRPIPSCVCVHACRCDATRVAKIYRTEDQIMQFLTGLNDNFGVVKTQVLLLNPLP 209
Query: 116 SLRQAYSFLQQEETRRSAMVHRSTIDKEGLIANSAREHIQAAKSS---SSDRDQLFCDYC 172
L + YS + QEE+ S + S D + N++ + +S + +C +C
Sbjct: 210 PLNKVYSLVVQEESNNSLPISISASDDSNIQLNASEVKKSQGRGKGFVNSQKPNRYCTFC 269
Query: 173 SKNRHTKEFCWKLHGPPT 190
K HT +FC++LHG P+
Sbjct: 270 HKTNHTVDFCYQLHGHPS 287
>IMGA|Medtr3g019580.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 4112343-4111299 H
EGN_Mt090430 20090702
Length = 334
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 1 PTISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSEL 60
P+I++ + ++ +W+ + + G+ + +L+Q++ KQG + +YF +L L
Sbjct: 50 PSIAQSVVFIENAMDMWNDLKDRFMR-GDRIRVAQLQQEISNLKQGSKKVTEYFTELRGL 108
Query: 61 WQKLDYYLDFQ-----ARCTDDATQVQKXIEVE-RVYDFLAGLNNEYDQIRIQVLGRDPF 114
W++LD Y C+ A + K +E R+ FL GLN EY + QVL DP
Sbjct: 109 WEELDQYRPMPHCTCPIPCSCLAMRNAKGFRLEDRIIQFLIGLNEEYQSVTSQVLLMDPL 168
Query: 115 PSLRQAYSFLQQEETRR--SAMVHRSTI--DKEGLIANSAREHIQAAKSSSSDRDQ---- 166
P + + +S + Q+E + +V +++ D + N+ Q + + Q
Sbjct: 169 PQINRVFSMIMQQERKAQYGIIVAPASVVEDTSARLVNAVDAQRQFGRGRGNAGFQGRGR 228
Query: 167 ---LFCDYCSKNRHTKEFCWKLHG-PPT 190
C++C ++ HT E C+K HG PP
Sbjct: 229 GNGRVCNFCGRSNHTMETCYKKHGFPPN 256
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Query: 36 LRQKVHETKQGDLTIAQYFAKLSELWQKLDYY-------LDFQARCTDDATQVQKXIEVE 88
LR K++ KQG ++ +YF ++ LW++L+ + RC Q IE +
Sbjct: 123 LRSKINNMKQGSKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCAAMRETRQYRIE-D 181
Query: 89 RVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIAN 148
+V FL GLN++++ ++ Q+L DP PS+ + Y + QEE+ ++ S+I + + N
Sbjct: 182 QVMQFLIGLNDQFNVVKTQILMLDPIPSINRVYYLVVQEESNNLSLA--SSITEPFSVVN 239
Query: 149 SAREHIQAAKS---SSSDRDQLFCDYCSKNRHTKEFCWKLHGPP 189
+A + S+ + C +C K+ HT ++C++ HG P
Sbjct: 240 AADSRKPQGRGRGYSNGYKPPRQCTFCGKSNHTVDYCYQKHGHP 283
>IMGA|Medtr6g069740.1 Zinc finger, C4-type
chr06_pseudomolecule_IMGAG_V3 12973766-12974997 H
EGN_Mt090430 20090702
Length = 366
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 19/238 (7%)
Query: 48 LTIAQYFAKLSELWQKLDYY-------LDFQARCTDDATQVQKXIEVE-RVYDFLAGLNN 99
+T+ +YF ++ LW++L+ + RC A + + +E +V FL GLN+
Sbjct: 115 VTVLEYFTEIKTLWEELNSHRPMPHCTCPHPCRCA--AMREARNFRLEDQVIQFLTGLND 172
Query: 100 EYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIAN---SAREHIQA 156
+++ ++ QVL DP PS+ + YS + QEE+ ++ S ID+ I N S + +
Sbjct: 173 QFNVVKTQVLMLDPLPSINKVYSLVVQEESNNQSL--SSPIDEPLSIVNVVESRKPQGRG 230
Query: 157 AKSSSSDRDQLFCDYCSKNRHTKEFCWKLHGPPTKGRGGKSGALS---EEPSTARSFSDK 213
S S + C +C K+ HT EF ++ HG P + +S +E T S +
Sbjct: 231 RGYSHSFKPPRHCSFCGKSNHTVEFFYQKHGHPNFQKQSSYVNVSSRNDELETQSGSSSE 290
Query: 214 EIQSLKRXXXXXXXXXXXXXXXNFLNSGNAFLTFLAKIAKPS-WVIDSGANKHTTGSI 270
L +F SG + + + +K W++DSGAN+H S+
Sbjct: 291 ASSILASSPFSANLIHAPSSSNSFNTSGISSIFSCSLQSKSDLWLLDSGANEHIVSSL 348
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 15/248 (6%)
Query: 86 EVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGL 145
E+ R FL GLN+ +D +R Q+L +P P++ + +S + Q E + + +D +
Sbjct: 150 EITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISI---PVDDSTI 206
Query: 146 IANSAREHIQAAK--SSSSDRDQLFCDYCSKNRHTKEFCWKLHG----PPTKGRGGKSGA 199
+ NSA + + +S+ + C +C ++ HT + C++ H +K G S
Sbjct: 207 LVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHEREDLDDSKSCKGNSNT 266
Query: 200 LSEEPSTARSFSDKE-IQSLKRXXXXXXXXXXXXXXXNFLNSGNAFLTF-LAKIAKPSWV 257
EPS + E + +L + N + SG +++ + + +W+
Sbjct: 267 ---EPSFGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRISYTMNHSSFGTWI 323
Query: 258 IDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVLHVPR 317
+DSGA+ H SIK+F +Y I + +G++ +G++ + + VL+V
Sbjct: 324 VDSGASDHICSSIKNFDSYAPIIPV-HIKLPNGNMAIAKFSGTVTFSPGLIARNVLYVAE 382
Query: 318 LPINLLYV 325
+NLL V
Sbjct: 383 FKLNLLSV 390
>IMGA|Medtr7g126870.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 29583401-29584363 H
EGN_Mt090430 20090702
Length = 302
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 23/132 (17%)
Query: 1 PTISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSEL 60
P IS+ L +DT +IW+ EL+++ + QG+ +I+ Y+ K+ +L
Sbjct: 106 PEISQSILWMDTALEIWN----------------ELKERFY---QGESSISSYYTKMKKL 146
Query: 61 WQKLDYYLDFQ-ARCTDDATQVQKXIEV---ERVYDFLAGLNNEYDQIRIQVLGRDPFPS 116
WQ+LD + + C DD + K E ++V FL GLN ++ +R Q++ DP PS
Sbjct: 147 WQELDNFRPIPTSNCVDDCKAIAKMREYKDSDQVIRFLRGLNEQFLAVRSQIMLMDPLPS 206
Query: 117 LRQAYSFLQQEE 128
+ + YS L Q+E
Sbjct: 207 IGKVYSLLVQQE 218
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 1 PTISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSEL 60
P I + + +++ ++W +S+ GN+ + +L + +H T+QGD ++++YF + L
Sbjct: 107 PHIFQSTICIESAFELWKDLEDRFSK-GNFFRVSDLLRDLHSTQQGDRSLSKYFTNMKIL 165
Query: 61 WQKLDYY-----LDFQARCTDD-ATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPF 114
W +L+ + CT + V+ +E + FL GLN Y +R Q L DP
Sbjct: 166 WDELEDLRPTPSCSYVNPCTCSLSNSVRNYKNMEYIICFLKGLNTIYSNVRTQNLLMDPL 225
Query: 115 PSLRQAYSFLQQEE 128
PS+ + YS + Q++
Sbjct: 226 PSISKVYSLVSQQD 239
>IMGA|Medtr3g083340.1 Integrase, catalytic region, related
chr03_pseudomolecule_IMGAG_V3 19557937-19559015 H
EGN_Mt090430 20090702
Length = 294
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 19/135 (14%)
Query: 93 FLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETR---RSAMVHRSTIDKEGLIANS 149
FL GLN+++ ++ QVL +P P L + YS + QEE++ S ++ T+D A+S
Sbjct: 17 FLTGLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQEESKDVFESVILMNPTLDNS---ADS 73
Query: 150 AREHIQAAKSSSSDRDQLFCDYCSKNRHTKEFCWKLHG-PPTKGRGGKSGALS------- 201
+ + S SS C +C ++ HT + C+K HG PP G+ +
Sbjct: 74 KKFPGKGKSSFSSGYKSKLCTFCGRHGHTVDTCYKKHGFPPNFGQNSSVNNVESLLDNVH 133
Query: 202 -----EEPSTARSFS 211
EEPS +S S
Sbjct: 134 VAENVEEPSKVQSSS 148
>IMGA|Medtr3g083290.1 Integrase, catalytic region, putative
chr03_pseudomolecule_IMGAG_V3 19547512-19547931 H
EGN_Mt090430 20090702
Length = 139
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 93 FLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETR---RSAMVHRSTIDKEGLIANS 149
FL GLN+++ ++ QVL +P P L + YS + QEE++ S ++ T+D A+S
Sbjct: 17 FLTGLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQEESKDVFESVILMNPTLDNS---ADS 73
Query: 150 AREHIQAAKSSSSDRDQLFCDYCSKNRHTKEFCWKLHG-PPTKGR 193
+ + S SS C +C ++ HT + C+K HG PP G+
Sbjct: 74 KKFPGKGKSSFSSGYKSKLCTFCGRHGHTVDTCYKKHGFPPNFGQ 118
>IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr03_pseudomolecule_IMGAG_V3
16240238-16240810 H EGN_Mt090430 20090702
Length = 147
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 28 GNYAQRYELRQKVHETKQGDLTIAQYFAKLSELWQKLDYYLDF-QARCTDDATQV----- 81
G+ + EL++++ KQG + ++F L LW++LD Y Q C T +
Sbjct: 33 GDRIRVAELQEEIANLKQGSKKVTEFFTNLRGLWEELDQYRPMPQCTCPIQCTCLAVRNN 92
Query: 82 QKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETR 130
+ I +R+ FL GLN +Y + QVL DP P + + +S + Q+E +
Sbjct: 93 KSFIAEDRIIKFLMGLNEDYQGVTSQVLLMDPLPQINRVFSMVMQQERK 141
>IMGA|Medtr8g005190.1 Integrase, catalytic region, related
chr08_pseudomolecule_IMGAG_V3 117969-116692 E
EGN_Mt090430 20090702
Length = 237
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 78 ATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHR 137
+T V+ E + FL GLN+ Y +R Q+L DP PS+ + YS + Q+++ +
Sbjct: 28 STSVRTYKNNEYILCFLKGLNDNYTNVRTQILLMDPLPSISKTYSLVIQQDSTPTEQPSE 87
Query: 138 STIDKEGLIANSAREHIQ----AAKSSSSDRDQLFCDYCSKNRHTKEFCWKLHG-PP 189
S + + S+ +H + + C C+K HT E C+ HG PP
Sbjct: 88 SNVFNVNSSSTSSAQHKGNHGLGRGRGKGPKTSMLCSNCNKTNHTVENCYFKHGFPP 144
>IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related
chr05_pseudomolecule_IMGAG_V3 33221869-33220686 H
EGN_Mt090430 20090702
Length = 369
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 12 TTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGD-LTIAQYFAKLSELWQKLDYYLDF 70
T + IW ++QT N + ++L + + ++ D L++ ++ + L LD +
Sbjct: 130 TARDIWLDLEERFAQT-NTPRIHQLWRNLCLMQEDDELSVTAFYTQFKSL---LDELSEL 185
Query: 71 QA--RCTDDAT-QVQKXIEVERVYDFLAGLNNE-YDQIRIQVLGRDPFPSLRQAYSFLQQ 126
Q CT A+ ++ + E +R++ FL L+NE Y ++ +L +P PSLR+A++ + +
Sbjct: 186 QPLPECTCGASKELMRMEEEQRLHLFLGSLDNEKYGHVKTSILNVEPLPSLRRAFNHVLR 245
Query: 127 EETRRSAMVHRSTIDKE-GLIANSAREHIQAAKSSSSDRDQLFCDYCSKNRHTKEFCWKL 185
EE + + G +S E+ Q D + CD+C K H K C+++
Sbjct: 246 EEAHFPVEKEKGNNKMDPGTAFHSYSENKQ-----KRDGPKPKCDHCGKVGHPKSKCFEI 300
Query: 186 HGPPT 190
G P+
Sbjct: 301 IGYPS 305
>IMGA|Medtr3g080970.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 19236298-19236945 H
EGN_Mt090430 20090702
Length = 200
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 36 LRQKVHETKQGDLTIAQYFAKLSELWQKLDYY-------LDFQARCTDDATQVQKXIEVE 88
LR K++ KQG + YF ++ LW++L+ + RCT + + I +
Sbjct: 108 LRSKINNVKQGSKYVLDYFTEMKTLWEELNSHHPMPHCTCPHPCRCTA-MRETRNFILED 166
Query: 89 RVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQA 120
+V FL GLN++++ + QVL DP PS + +
Sbjct: 167 QVIQFLTGLNDQFNVVNTQVLMLDPLPSTKAS 198
>IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG_V3
33350941-33351963 H EGN_Mt090430 20090702
Length = 326
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 74 CTDDAT-QVQKXIEVERVYDFLAGLNNE-YDQIRIQVLGRDPFPSLRQAYSFLQQEETRR 131
CT A+ ++ + E + ++ FL L+NE Y ++ +L +P PSLR+A++ + +EE
Sbjct: 169 CTCGASKELMRREEEQCLHLFLGSLDNEKYGHVKTSILNVEPLPSLRRAFNHVLREEA-- 226
Query: 132 SAMVHRSTIDKE---GLIANSAREHIQAAKSSSSDRDQLFCDYCSKNRHTKEFCWKLHGP 188
R T++KE + H + + D + CD+C K H K C+++ G
Sbjct: 227 -----RFTVEKEKGNNKMDPGTAFHSYSGNKQNRDGPKPKCDHCGKVGHPKSKCFEIIGY 281
Query: 189 PT 190
P+
Sbjct: 282 PS 283