Jatropha Genome Database

JcCA0146281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.10 - phase: 0 /TE
         (228 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140650.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V...    55   2e-08
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc...    55   3e-08
IMGA|Medtr2g100340.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V...    54   8e-08
IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V...    53   1e-07
IMGA|Medtr2g037840.1 Ribonuclease H; En/Spm-like transposon prot...    52   2e-07
IMGA|Medtr4g134750.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V...    51   5e-07
IMGA|Medtr7g127550.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V...    51   5e-07
IMGA|Medtr8g078260.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V...    49   1e-06
IMGA|Medtr4g128950.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V...    48   3e-06
IMGA|Medtr4g129050.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V...    48   4e-06
IMGA|Medtr4g108440.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V...    48   4e-06

>IMGA|Medtr7g140650.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
           33914311-33913883 H EGN_Mt090430 20090702
          Length = 142

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS L   G A  GG+IR     +  GF   +G  +             +  WDA  RK++
Sbjct: 7   GSALTNPGKACYGGLIRKHDESFQLGFFGSVGISNILHAEIQALLTSVKLCWDAGYRKLI 66

Query: 137 VEMDSLMSIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADALL-IWQ 195
              DSL ++Q+I         +A IL+  R  L+K  +I   +I R+GN  A  L  IW+
Sbjct: 67  CYSDSLHAVQLIMKETTKFHHYANILELIRMYLAKDWSISIHHIIREGNFRAGILAKIWE 126


>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Ribonuclease H
           chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
           EGN_Mt090430 20090702
          Length = 659

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 1/116 (0%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS     G A  GG++RN  G W  GF    G  ++            + AWD   R ++
Sbjct: 506 GSSFGNPGNAGFGGLLRNNRGNWTHGFSGSCGRATNLFAELSAIWKGLQLAWDLGYRSII 565

Query: 137 VEMDSLMSIQMI-KAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADAL 191
           +E DS +++ +I      D    A +L   R L S P  + F +  R+GN  AD L
Sbjct: 566 MESDSQVALDLILDTKQKDFHPHASLLSFIRKLSSLPWVVSFSHTLREGNECADWL 621


>IMGA|Medtr2g100340.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
           23355933-23356406 H EGN_Mt090430 20090702
          Length = 157

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%)

Query: 90  GVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLMSIQMIK 149
           G+IRN+ G W+ GF+  +G                  AW+  C ++    DS ++I++I 
Sbjct: 20  GLIRNSDGAWIQGFVGNIGFSHILYEELLGVYYGLAMAWEIGCSELWCYSDSKLAIKLIS 79

Query: 150 APANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADAL 191
            P N    +A IL   + LL++   +   +  R+GN   D L
Sbjct: 80  EPVNTWHHYAAILHNIKKLLTRDWQVHLLHTLREGNACVDYL 121


>IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
           23474829-23476616 H EGN_Mt090430 20090702
          Length = 477

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%)

Query: 90  GVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLMSIQMIK 149
           G+IRN+ G W+ GF+  +G                  AW+  C ++    DS ++I++I 
Sbjct: 340 GLIRNSDGAWIQGFVGNIGFSHILYEELLGVYYGLAMAWEIGCSELWCYSDSKLAIKLIS 399

Query: 150 APANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADAL 191
            P N    +A IL   + LL++   +   +  R+GN   D L
Sbjct: 400 EPVNTWHHYAAILHNIKKLLTRDWQVHLLHTLREGNACVDYL 441


>IMGA|Medtr2g037840.1 Ribonuclease H; En/Spm-like transposon
           proteins chr02_pseudomolecule_IMGAG_V3 10460834-10454483
           E EGN_Mt090430 20090702
          Length = 184

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS     G A  GG+IRN  G W+ GF    G  S+            + AWD   R + 
Sbjct: 32  GSSFGNPGRAGFGGLIRNDVGGWIHGFSESCGRVSNLLVELYAILNGLQLAWDLGFRIIT 91

Query: 137 VEMDSLMSIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVAD 189
           +E D   ++ +I          A +L + R L+S+  +++F +  R+GN  AD
Sbjct: 92  LEPDYKSALDLILDNDTTYHPHAIVLGRIRTLMSRDWSLLFNHTLREGNECAD 144


>IMGA|Medtr4g134750.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
           32547851-32547069 H EGN_Mt090430 20090702
          Length = 178

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 89  GGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLMSIQMI 148
           GG++RN  G W+ GF    G  ++            + AW+   R +++E DS +++ +I
Sbjct: 37  GGLLRNNRGNWIHGFFGSCGRATNLFAELSAIWKGLQLAWNTGYRSIIMESDSQVALDLI 96

Query: 149 -KAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVAD 189
                 D    A +L   R L S P  + F +  ++GN  AD
Sbjct: 97  VDTKQKDFHPDATLLSLIRKLPSLPWVVSFSHTLKEGNECAD 138


>IMGA|Medtr7g127550.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
           29930312-29931382 H EGN_Mt090430 20090702
          Length = 239

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 52/116 (44%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS+ L S L   GG+IR+ +G ++ GF  ++                 +  WD   + VV
Sbjct: 91  GSVFLDSNLGGFGGLIRDHTGSFLHGFFGKISRPCILHVEILGLYHGLKLCWDTGFKHVV 150

Query: 137 VEMDSLMSIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADALL 192
              DS   + +++   N + ++  ++   + LL +   +  ++  R+GN   D L+
Sbjct: 151 CHSDSTTVVDLVQKDLNVHHKYGNLIMAIKQLLRRDWVVSLRHTLREGNATTDFLV 206


>IMGA|Medtr8g078260.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V3
           15810179-15810910 H EGN_Mt090430 20090702
          Length = 243

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%)

Query: 83  SGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSL 142
           +G+A  GG+IR   G W+ GF   +G C +              A +   R V V +DSL
Sbjct: 95  NGVAGCGGIIRGCDGEWLGGFAKSIGMCCAYLAELWGVLEGLNYARNLGFRAVEVNVDSL 154

Query: 143 MSIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADALLIWQC 196
           +    I    + +     ++ + + L++    IV K+ YR+ N+ ADAL  + C
Sbjct: 155 VVANCINGKGHGSSSGRSLVFEIQRLINLDWEIVVKHSYREANQCADALANFGC 208


>IMGA|Medtr4g128950.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
           30531635-30532403 H EGN_Mt090430 20090702
          Length = 221

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 50/113 (44%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS L   G A  GG+IR+ +G W+ GF   +G   S            R AWD   R V 
Sbjct: 56  GSSLGNPGQAGFGGLIRDHNGSWILGFSGYIGIVDSVEAELKGIESGLRLAWDCGYRDVS 115

Query: 137 VEMDSLMSIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVAD 189
              D   +I + +   +   ++  I +  + L+S+   ++  +  R+ N+ AD
Sbjct: 116 CRSDCWKAILLSQDSTSQPHKYVEITESIKELVSRDWIVLLNWTERESNQCAD 168


>IMGA|Medtr4g129050.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
           30607158-30606495 H EGN_Mt090430 20090702
          Length = 186

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 50/113 (44%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS L   G A  GG+IR+ +G W+ GF   +G   S            R AWD   R V 
Sbjct: 21  GSSLGNPGQAGFGGLIRDHNGSWILGFSGYIGIVDSVQAELKGIESGLRLAWDCGYRDVS 80

Query: 137 VEMDSLMSIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVAD 189
              D   +I + +   +   ++  I +  + L+S+   ++  +  R+ N+ AD
Sbjct: 81  CRSDCWKAILLSQDSTSQPHKYVEITESIKELVSRDWIVLLNWTERESNQCAD 133


>IMGA|Medtr4g108440.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
           24029311-24026650 E EGN_Mt090430 20090702
          Length = 332

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 44/106 (41%)

Query: 84  GLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLM 143
           G++  GGV+    G W+  F    G  +             + AWD E   V+   DS +
Sbjct: 188 GISGFGGVVCRNDGSWLYWFAGNAGISTIIHVELSALYYGLKAAWDREYMDVICYFDSTL 247

Query: 144 SIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVAD 189
            IQ++    N +  +A I+   + LL     I  K+  R+ N  AD
Sbjct: 248 PIQLVSTMMNPSHHYAAIISNVQDLLQWSWNIQLKHFVRETNSSAD 293