Jatropha Genome Database

JcCA0145861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145861.20 + phase: 0 /partial
         (225 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g139650.1 Cyclin-like F-box chr08_pseudomolecule_IMGA...   210   6e-55

>IMGA|Medtr8g139650.1 Cyclin-like F-box
           chr08_pseudomolecule_IMGAG_V3 34135969-34130809 E
           EGN_Mt090430 20090702
          Length = 270

 Score =  210 bits (534), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 141/223 (63%), Gaps = 6/223 (2%)

Query: 1   VLDVCALGCCSRFWSELCRSDCLWEFLTKERWPSVSFISDFSPCSVPVIKGWREIYIKMH 60
           V D+CALGCCS+FW +LC SD +W  L   RWP +   S  SP     IK WR +Y++ H
Sbjct: 52  VRDLCALGCCSKFWRKLCFSDSIWHSLVTNRWPLLH--SSLSP----YIKTWRRLYVERH 105

Query: 61  REMAGKATTVIEFVEHRSLSQSLEIGDYNKAIQDLWLMRLAFKDIQMFLFKPXXXXXXXX 120
            E+  +A +V  F++  S ++SLE+GDY +A + +   R  F+DIQ FLFKP        
Sbjct: 106 VELGIRAGSVERFLKACSRNESLEVGDYLQAFEIINGARFGFEDIQRFLFKPQMNVLLNL 165

Query: 121 XXXHYCIFCLKLPARNVMDALLSCKISEREVCVNWWKLGRWFYGFRMRDESHSRKVSLTD 180
              HYC+  L +P  ++++AL +C+IS R VCV WWKLGRW YG+R RDE   R VSL D
Sbjct: 166 VGVHYCMTSLGIPGDDLVEALRTCEISNRHVCVKWWKLGRWIYGYRGRDELLFRWVSLAD 225

Query: 181 LTTDKGEDVLGVLQRGAIHEVLRVEIFISNATTSPWSSQSSHR 223
           L T+ GE VLGVL+RG +HEVLRV+I      + PWS Q + R
Sbjct: 226 LATEDGESVLGVLRRGTVHEVLRVQISAIGHKSIPWSYQVTQR 268