Jatropha Genome Database

JcCA0145721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145721.10 + phase: 1 /partial
         (154 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g014320.1 Photosynthetic reaction centre, cytochrome ...    50   4e-07
IMGA|Medtr2g013790.1 Photosynthetic reaction centre, cytochrome ...    50   4e-07

>IMGA|Medtr2g014320.1 Photosynthetic reaction centre, cytochrome c
           subunit; WD40-like chr02_pseudomolecule_IMGAG_V3
           3615244-3611030 E EGN_Mt090430 20090702
          Length = 365

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +++DL +G ++  +  HDG++T L   P ++LL + S DRT++ W
Sbjct: 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFW 211

Query: 72  DLRSPLFLKVIQMGYPVSLFGVKMLFRFPKIRLGFQLYPDLLK 114
           DL S   +   +        GV+ +   P  R  F  + D LK
Sbjct: 212 DLESFELIGSARR----EATGVRSMAFHPDGRTLFSGHEDGLK 250


>IMGA|Medtr2g013790.1 Photosynthetic reaction centre, cytochrome c
           subunit; WD40-like chr02_pseudomolecule_IMGAG_V3
           3232812-3228598 E EGN_Mt090430 20090702
          Length = 365

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +++DL +G ++  +  HDG++T L   P ++LL + S DRT++ W
Sbjct: 152 PDGRWVVSGGFDNVVKVWDLTAGKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFW 211

Query: 72  DLRSPLFLKVIQMGYPVSLFGVKMLFRFPKIRLGFQLYPDLLK 114
           DL S   +   +        GV+ +   P  R  F  + D LK
Sbjct: 212 DLESFELIGSARR----EATGVRSMAFHPDGRTLFSGHEDGLK 250