Jatropha Genome Database

JcCA0144381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144381.10 - phase: 0 /partial
         (211 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g125890.1 Dihydrodipicolinate reductase chr04_pseudom...   234   2e-62

>IMGA|Medtr4g125890.1 Dihydrodipicolinate reductase
           chr04_pseudomolecule_IMGAG_V3 29771691-29773369 E
           EGN_Mt090430 20090702
          Length = 186

 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 128/153 (83%), Gaps = 3/153 (1%)

Query: 1   MGKAVIKAADTAGLQILSVSFGSAEESGQTVQVCGKDIKIHGPSEREDVLASLYDEYPNL 60
           MGKAVI AA+ AGL ++ VSFG  EESGQT +VCG++  +HGPS+RE  L S+ D+YPNL
Sbjct: 25  MGKAVINAAEAAGLNVVPVSFGCEEESGQTFEVCGREFLVHGPSDRESFLESVLDKYPNL 84

Query: 61  IVVDYTVPSAVNDNANLYCKVGVPFVMGTTGGDRDLLYKTVEDSKVYAVISPQMGKQVVA 120
           I+VDYTVP AVN N  LY KVGVPFVMGTTGGDRDLLYKTV+DSK YAVISPQMGKQVVA
Sbjct: 85  IIVDYTVPDAVNGNGELYSKVGVPFVMGTTGGDRDLLYKTVQDSKNYAVISPQMGKQVVA 144

Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLD 153
           FLAAMEIMAEQFPGAFSGYSLQ     Q GKL+
Sbjct: 145 FLAAMEIMAEQFPGAFSGYSLQ---PDQHGKLN 174