Jatropha Genome Database

JcCA0144211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144211.10 + phase: 1 /partial/short
         (33 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g014590.1 Peptidase M20 chr05_pseudomolecule_IMGAG_V3...    69   5e-13

>IMGA|Medtr5g014590.1 Peptidase M20 chr05_pseudomolecule_IMGAG_V3
           4709355-4713847 E EGN_Mt090430 20090702
          Length = 439

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 1   LMATYHAKNEYCLFSDMCQGYRVFVSVISQLEE 33
           LMATYHA+NEYCLF+DMCQGYRVF S+I+QLE+
Sbjct: 407 LMATYHAQNEYCLFTDMCQGYRVFASIIAQLED 439