Jatropha Genome Database

JcCA0143661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143661.10 + phase: 0 /pseudo/partial
         (221 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g014590.1 Peptidase M20 chr05_pseudomolecule_IMGAG_V3...   224   3e-59

>IMGA|Medtr5g014590.1 Peptidase M20 chr05_pseudomolecule_IMGAG_V3
           4709355-4713847 E EGN_Mt090430 20090702
          Length = 439

 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 110/113 (97%)

Query: 109 GVGVDALVKDGLLNKLKGGPLFWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLAHKAIN 168
           GVGVDALV+DGLLNKLK GPLFWIDTADKQPC+GTGGMIPWKLHVTGK+FHSGLAHKAIN
Sbjct: 174 GVGVDALVQDGLLNKLKEGPLFWIDTADKQPCVGTGGMIPWKLHVTGKMFHSGLAHKAIN 233

Query: 169 PLELAMEALKEIQSRFYRDFPPHPKEKVYGFATPSTMKPTQWSYPGGGINQIP 221
           PLELAM+A+KEIQ +FY DFPPHP+E+VYGFATPSTMKPTQWSYPGGGINQIP
Sbjct: 234 PLELAMDAIKEIQLKFYNDFPPHPQEQVYGFATPSTMKPTQWSYPGGGINQIP 286



 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 28/35 (80%)

Query: 6  EFLGELNRESFVSLLRKIIGESKHVQNNPPELIPR 40
          E LG L ++SF+ LL  +IGES+HVQNNPPELIP 
Sbjct: 10 ETLGNLEKDSFIPLLTNLIGESRHVQNNPPELIPE 44