Jatropha Genome Database

JcCA0143221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143221.10 - phase: 0 /partial
         (254 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g024110.1 Zinc finger, CCCH-type chr01_pseudomolecule...   199   1e-51
IMGA|Medtr8g090190.1 Zinc finger, CCCH-type chr08_pseudomolecule...   157   6e-39
IMGA|Medtr7g130110.1 Homeodomain-related chr07_pseudomolecule_IM...    48   4e-06

>IMGA|Medtr1g024110.1 Zinc finger, CCCH-type
           chr01_pseudomolecule_IMGAG_V3 5598014-5592926 E
           EGN_Mt090430 20090702
          Length = 433

 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/250 (48%), Positives = 152/250 (60%), Gaps = 38/250 (15%)

Query: 1   VRLFLSEESPSQVGLGAQDHLQAKASWLSHPAGIAADDILPPGFEGGQPANQLHIKLSDI 60
           VRLFLSEESPSQVGL +QDHLQ K S L       +DDILPPGFEG   ++Q  IKLSDI
Sbjct: 21  VRLFLSEESPSQVGLNSQDHLQEKISSLLPQGEAGSDDILPPGFEGTHTSSQFDIKLSDI 80

Query: 61  PVIKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELE 120
           PVI W  PP+ VLDLTWQVVAGEESKE+   +QREMRVLEA+YPR S+IPPNP  S +++
Sbjct: 81  PVISWIKPPKIVLDLTWQVVAGEESKEIFDQHQREMRVLEAIYPRISSIPPNP-ISVDVD 139

Query: 121 DLRLNDHQVPLIPITPIEDEDAVDAPSEFRGPYNAPVSSQSQLLASGILPPQYSIPAISN 180
           D    D  + +IPITP+ED D                   +  L+ GIL    ++  +S 
Sbjct: 140 DSHYIDGHIVVIPITPVEDGDV-----------------GADTLSPGILDGSNTVTTMSM 182

Query: 181 TPVNEKPAAGALLGVEPDVIXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRLIKKLAQ 240
             V++  AA   L                + KS++ G+LID +LL  ILNNP +I+KL +
Sbjct: 183 --VSDVAAASVAL--------------TSLVKSSEHGNLIDPELLNNILNNPEVIEKLVR 226

Query: 241 DYGAASNVQN 250
           +Y    NVQN
Sbjct: 227 NY----NVQN 232


>IMGA|Medtr8g090190.1 Zinc finger, CCCH-type
           chr08_pseudomolecule_IMGAG_V3 19613197-19605047 E
           EGN_Mt090430 20090702
          Length = 557

 Score =  157 bits (396), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/249 (44%), Positives = 145/249 (58%), Gaps = 9/249 (3%)

Query: 1   VRLFLSEESPSQVGLGAQDHLQAKAS-WLSHPAGIAADDILPPGFEGGQPANQLHIKLSD 59
           V+LFLSE+ PS+VGL  QD L+AKAS  L +    + D  LPPGFE G   NQ  ++ S 
Sbjct: 22  VKLFLSEDYPSKVGLNLQDSLEAKASSMLCYSTNESID--LPPGFESGHFPNQSKVQFSH 79

Query: 60  IPVIKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAEL 119
           IP IKW+CP  FV    W V AG+ES+E EV   RE+RVLEAVYPRPSAIPP+P+ S ++
Sbjct: 80  IPKIKWECPLSFVFSPNWLVAAGQESREKEVQKLREIRVLEAVYPRPSAIPPSPSVSLDV 139

Query: 120 EDLRLNDHQVPLIPITPIEDEDAVDAPSEFRGPYNAPVSSQSQLLASGILPPQYSIPAIS 179
           E+   +D+  PLIPI PIE+E+++    E     N   + Q Q L    +    SI +  
Sbjct: 140 EEEEYDDNSTPLIPIIPIEEEESMTNLPELAAAVNTHPNVQPQNLHQH-MSATTSISSDR 198

Query: 180 NT--PVNEKPAAGALLGV---EPDVIXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRL 234
           N+   V+       L GV                 I KSN+Q  LID DLLVKILN+P++
Sbjct: 199 NSSRTVSSDARLMPLAGVSSSLEADAAAASEVVAAILKSNEQAGLIDMDLLVKILNDPKM 258

Query: 235 IKKLAQDYG 243
           I+ L  ++G
Sbjct: 259 IENLINEHG 267


>IMGA|Medtr7g130110.1 Homeodomain-related
           chr07_pseudomolecule_IMGAG_V3 30336569-30347313 E
           EGN_Mt090430 20090702
          Length = 1016

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 63  IKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELEDL 122
           I WK P    L+ TW+V AG +SKEV V   R  R  E +Y     +P NP    ++E +
Sbjct: 533 IPWKSPAEVKLEDTWRVGAGVDSKEVHVQENRNRRDKETIYKTAQEMPSNPKEPWDVE-M 591

Query: 123 RLNDHQVPLIPITPIEDEDAVD 144
             +D     IPI  + D D V+
Sbjct: 592 DYDDSLTLEIPIEQLPDCDDVE 613