Jatropha Genome Database

JcCA0143091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.30 + phase: 0 
         (191 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g150660.1 hypothetical protein chr03_pseudomolecule_I...   174   3e-44

>IMGA|Medtr3g150660.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 39740522-39744589 E
           EGN_Mt090430 20090702
          Length = 170

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 114/179 (63%), Gaps = 12/179 (6%)

Query: 13  KTTQELALEGQKHLEETIQAAYQILSSMNDELCNPNLWXXXXXXXXXXXXXXXXXPITAA 72
           KTTQ+LA+EG K+LEETIQ A++ILSSMNDELCNP  W                     +
Sbjct: 4   KTTQDLAIEGHKYLEETIQHAFKILSSMNDELCNPVWWSTSPSSATSPN--------APS 55

Query: 73  TNGDVXXXXXXXXXXXXXXXXXXXTCNGALDEARFRYKNSVAALREVLAAIPNSQKAKAF 132
           +NGD                        ALDEAR RYK++VA LR VLAAIPNSQKA  F
Sbjct: 56  SNGDANSENSGQHADGAAPSGGAGG---ALDEARLRYKDAVAGLRSVLAAIPNSQKANTF 112

Query: 133 ETTNSSASPADHAEVEKLEEQASNLRKELVNKNACLKLLIDQLRDLITDISTWQSPCSV 191
           +   S+ SP D AE+EKLEEQAS+LRKEL NKN  LK+LIDQLR+LITDISTWQSP S 
Sbjct: 113 DG-GSADSPMDEAEIEKLEEQASSLRKELGNKNLHLKILIDQLRELITDISTWQSPFST 170