Jatropha Genome Database

JcCA0142841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142841.20 + phase: 0 /pseudo/partial
         (366 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g141080.1 UPF0202 protein At3g57940, putative chr04_p...   350   5e-97
IMGA|Medtr2g033580.1 Region of unknown function DUF1726 chr02_ps...   327   5e-90

>IMGA|Medtr4g141080.1 UPF0202 protein At3g57940, putative
           chr04_pseudomolecule_IMGAG_V3 34749022-34742509 E
           EGN_Mt090430 20090702
          Length = 657

 Score =  350 bits (899), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 194/249 (77%), Gaps = 2/249 (0%)

Query: 118 ILKEYLEILLECAYCRTIETVEGGGXXXXXXXXXXXXXXXYTMVMDVHDRFRTESHSEAA 177
           +L+++ E L      RTIETVEGGG               YTMVMDVHDRFRTESHS+A 
Sbjct: 121 VLQDF-EALTPNLLARTIETVEGGGLIVLLLRSLSSLTSLYTMVMDVHDRFRTESHSQAT 179

Query: 178 GRFNERFLLSLASCKACVVMDDELNILPISSHMRSITPVPVKEDSEGLSEAERDLKNLKE 237
           GRFNERFLLS+ASCKACVVMDDELN+LPISSH+RSI PVPV+EDSEGLSEA ++LK LKE
Sbjct: 180 GRFNERFLLSIASCKACVVMDDELNVLPISSHIRSIKPVPVEEDSEGLSEAYQELKKLKE 239

Query: 238 QLHDDFPVGPLIKRCCTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSXXXXXXXXX 297
           +L+ DFPVGPLI++C TLDQGKAVITFLDAILDK LRSTVALLAARGRGKS         
Sbjct: 240 ELNGDFPVGPLIRKCSTLDQGKAVITFLDAILDKKLRSTVALLAARGRGKSAALGLSIAG 299

Query: 298 XXXXXYSNIFVTAPSPENLKTLFEFICKGFDVLEYKEHIDYDVVKSVNPEFKKATVRINV 357
                YSNIFVTAPSPENLKTLFEFICKGFDVLEYKEH D+D VKSV        VRINV
Sbjct: 300 AIAAGYSNIFVTAPSPENLKTLFEFICKGFDVLEYKEHEDFD-VKSVGESKNATVVRINV 358

Query: 358 YKQHRQTIQ 366
           YK HRQTIQ
Sbjct: 359 YKHHRQTIQ 367



 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 1  MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQARHFHKIM 43
          MRKKVDERIRTLIENGVK RHRSMFVIIGDKSRDQ  + H ++
Sbjct: 1  MRKKVDERIRTLIENGVKSRHRSMFVIIGDKSRDQIVNLHYML 43


>IMGA|Medtr2g033580.1 Region of unknown function DUF1726
           chr02_pseudomolecule_IMGAG_V3 9196148-9186916 H
           EGN_Mt090430 20090702
          Length = 1006

 Score =  327 bits (838), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 168/250 (67%), Positives = 187/250 (74%), Gaps = 5/250 (2%)

Query: 118 ILKEYLEILLECAYCRTIETVEGGGXXXXXXXXXXXXXXXYTMVMDVHDRFRTESHSEAA 177
           IL+++ E L      RTIETVEGGG               YTMVMDVH+RFRTESH +A 
Sbjct: 117 ILQDF-EALTPNLLARTIETVEGGGLVVLLIRTLSSLTCLYTMVMDVHERFRTESHMDAT 175

Query: 178 GRFNERFLLSLASCKACVVMDDELNILPISSHMRSITPVPVKEDSEGLSEAERDLKNLKE 237
           GRFNERFLLSLASCKACV MDDELNILPISSH+RSITPV V EDSEGLS+ E+ LKNLKE
Sbjct: 176 GRFNERFLLSLASCKACVFMDDELNILPISSHIRSITPVSVNEDSEGLSKTEQGLKNLKE 235

Query: 238 QLHDDFPVGPLIKRCCTLDQGKAVITFLDAILDKTLRST-VALLAARGRGKSXXXXXXXX 296
           QL +   VGPLI++CCT+DQGKAV+TF+DAIL+  LRS  VALLAARGRGKS        
Sbjct: 236 QLDETLHVGPLIRKCCTMDQGKAVVTFMDAILNTKLRSAVVALLAARGRGKSAALGLSIA 295

Query: 297 XXXXXXYSNIFVTAPSPENLKTLFEFICKGFDVLEYKEHIDYDVVKSVNPEFKKATVRIN 356
                 YSNIFVTAPSPENLKTLFEF+CKG   L Y+E   +DVVKSVNP F KAT RIN
Sbjct: 296 GAIAVGYSNIFVTAPSPENLKTLFEFVCKGLSALGYEE---FDVVKSVNPAFHKATERIN 352

Query: 357 VYKQHRQTIQ 366
           +YK HRQTIQ
Sbjct: 353 IYKHHRQTIQ 362



 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%)

Query: 1  MRKKVDERIRTLIENGVKLRHRSMFVIIGDKSRDQARHFHKIM 43
          MRKKVDERIRTLIENGVK RHRSMFVIIGDK  DQ  + H ++
Sbjct: 1  MRKKVDERIRTLIENGVKTRHRSMFVIIGDKYYDQIVNLHYML 43