Jatropha Genome Database
- JcCA0142031.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0142031.30 - phase: 1 /pseudo/partial
(380 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g119860.1 Cyclin-like F-box; chr08_pseudomolecule_IMG... 111 5e-25
IMGA|Medtr4g133940.1 Cyclin-like F-box; chr04_pseudomolecule_IMG... 98 8e-21
IMGA|Medtr2g024470.1 Cyclin-like F-box; Galactose oxidase, centr... 97 2e-20
IMGA|Medtr3g144840.1 Cyclin-like F-box; chr03_pseudomolecule_IMG... 84 2e-16
IMGA|Medtr2g008570.1 Cyclin-like F-box; chr02_pseudomolecule_IMG... 71 9e-13
IMGA|Medtr3g103600.1 Cyclin-like F-box; Galactose oxidase, centr... 71 1e-12
>IMGA|Medtr8g119860.1 Cyclin-like F-box;
chr08_pseudomolecule_IMGAG_V3 27289161-27291907 E
EGN_Mt090430 20090702
Length = 428
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 154/346 (44%), Gaps = 31/346 (8%)
Query: 19 EESQGPLICGIPDDIALFCLARVPRKYHTVLKCVCRRWRDLVCNAEWHAYRGKHNLSETW 78
+Q PL+ G+PDD+A+ CL RVPR H L+ VC+RW L+ +++ R L+E W
Sbjct: 61 SRNQSPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLIGNFFYSLRKSLRLAEEW 120
Query: 79 IYALCRDKFERICCYVLDPDSSRRSWKLIQGLPPRCLKRKGIGFEALGKKLLSVRWLWLV 138
IY + RD+ +I + DP ++ Q LPP + ++ G G +L+ L+L
Sbjct: 121 IYVIKRDRDGKISWHAFDP-----VYQQWQPLPP--VPKEYSGALGFGCAVLNGCHLYLF 173
Query: 139 GRCY**SLLL*YF*QLMD*SCFLVYCKKLKNNFGIVKLPTPLFRCYFACEVLDGRIYAIG 198
G + S V + N R +F V++ +Y G
Sbjct: 174 GGK-----------DPLKGSMRRVIFYSTRTNKWHRAPDMLRRRHFFGSCVINNCLYVAG 222
Query: 199 GLGSKLSDP-HSWDTFDPHKNSWESHSDGNVIPDVEDSIVLDGKIYIRCGASSVSSHVYA 257
G + S + +DP+KN W SD + +V DGK +++ S V +
Sbjct: 223 GENEGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYDGKWFLKGLGS--HRQVLS 280
Query: 258 VLYEPSNGTWQHADADMVSGWRGPAVVVDGTLYVLDQSSGTRLMMWQKDKRVW------- 310
+Y+ +N +W M+SGWR P+ ++G LY L+ G +L ++ W
Sbjct: 281 EVYQLANDSWCPVQNGMISGWRNPSTTLNGKLYALECKDGCKLRVYDDATDSWSKHIDSK 340
Query: 311 VAVGRLSALLTRPPCRLVATGKRIFIIGKGLSTVVFDIDKTGNMEG 356
+ +G AL LV ++ II +S + D+ K +++G
Sbjct: 341 MHLGSSRAL---EAAALVPLNGKLCIIRNNMSISLVDVSKLEDLKG 383
>IMGA|Medtr4g133940.1 Cyclin-like F-box;
chr04_pseudomolecule_IMGAG_V3 32194624-32189765 E
EGN_Mt090430 20090702
Length = 437
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 31/335 (9%)
Query: 22 QGPLICGIPDDIALFCLARVPRKYHTVLKCVCRRWRDLVCNAEWHAYRGKHNLSETWIYA 81
Q PL+ G+PDD+A+ CL RVPR H L+ VC+RW L+ +++ R ++E W+Y
Sbjct: 74 QPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLSGNFFYSLRKSLGMAEEWVYV 133
Query: 82 LCRDKFERICCYVLDPDSSRRSWKLIQGLPPRCLKRKGIGFEALGK--KLLSVRWLWLVG 139
+ RD+ +I + DP +++ Q LPP G EALG +LS L+L G
Sbjct: 134 IKRDREGKISLHAFDP-----IYQIWQSLPP----VPGEYSEALGFGCAVLSGCHLYLFG 184
Query: 140 RCY**SLLL*YF*QLMD*SCFLVYCKKLKNNFGIVKLPTPLF-RCYFACEVLDGRIYAIG 198
L +++ N + + P L R F V++ +Y G
Sbjct: 185 GRD----------PLKGSMRRVIFYNARTNKWH--RAPDMLRKRHLFGSCVMNNCLYVAG 232
Query: 199 GLGSKLSDP-HSWDTFDPHKNSWESHSDGNVIPDVEDSIVLDGKIYIRCGASSVSSHVYA 257
G + S + +DP++N W S+ ++ +G +++ S + +V
Sbjct: 233 GECKGIQRTLRSAEVYDPNRNRWSFISEMTTAMVPFIGVIHNGTWFLKGLGS--NRNVIC 290
Query: 258 VLYEPSNGTWQHADADMVSGWRGPAVVVDGTLYVLDQSSGTRLMMWQKDKRVWVAV--GR 315
Y + TW + MV GWR P++ ++G LY LD G +L ++ W R
Sbjct: 291 EAYSQESDTWTPVNNGMVVGWRNPSISLNGELYALDCQDGCKLKVYDMATDSWKKFIDSR 350
Query: 316 LSALLTRP--PCRLVATGKRIFIIGKGLSTVVFDI 348
L +R LV+ ++ II +S + D+
Sbjct: 351 LHLGSSRALDAAALVSLNGKLCIIRNNMSISLVDV 385
>IMGA|Medtr2g024470.1 Cyclin-like F-box; Galactose oxidase, central;
chr02_pseudomolecule_IMGAG_V3 6203119-6206722 E
EGN_Mt090430 20090702
Length = 405
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 147/348 (42%), Gaps = 45/348 (12%)
Query: 25 LICGIPDDIALFCLARVPRKYHTVLKCVCRRWRDLVCNAE-WHAYRGKHNLSETWIYALC 83
LI G+PDD+AL CL R+P + H+ + VC+RW L+ N E + R + + W++
Sbjct: 52 LIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQMGFKDPWLFVFA 111
Query: 84 RDKFE-RICCYVLDPDSSRRSWKLIQGLP---------PRCLKRKGIGFEALGKKLLSVR 133
K +I VLD + SW I +P RC+ G + ++S
Sbjct: 112 YHKCTGKIQWQVLD--LTHFSWHTIPAMPCKDKVCPHGFRCVSMPHDGTLYVCGGMVSD- 168
Query: 134 WLWLVGRCY**SLLL*YF*QLMD*SCFLVYCKKLKNNFGIVKLPTPLFRCYFACEVLDGR 193
+D LV ++ N V R +FA V+DG
Sbjct: 169 ---------------------VDCPLDLVLKYEITKNRWTVMNRMISARSFFASGVIDGM 207
Query: 194 IYAIGGLGSKLSDPHSWDTFDPHKNSWESHSDGNVIPDVEDSIVLDGKIYIRCG---ASS 250
+YA GG + L + S + DP +W + ++ D+ VL+GK+ + G
Sbjct: 208 VYAAGGNSTDLYELDSAEVLDPISGNWRAIANMGTNMASYDAAVLNGKLLVTEGWLWPFY 267
Query: 251 VSSHVYAVLYEPSNGTWQHADADMVSGWRGPAVVVDGTLYVLDQSSGTRLMMWQKDKRVW 310
VS +Y+P +W+ + GW G +VVV G L+V+ + +L ++ ++ W
Sbjct: 268 VSPR--GQVYDPRTNSWETMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYNQEADSW 325
Query: 311 VAVGRLSALLTRPPCRLVATGK---RIFIIGKGLSTVVFDIDKTGNME 355
A+ + L C+ A +I+++G+ L V I K E
Sbjct: 326 EAID--GSPLPEQICKPFAVNACDCQIYVVGRNLLVAVGHISKLNPKE 371
>IMGA|Medtr3g144840.1 Cyclin-like F-box;
chr03_pseudomolecule_IMGAG_V3 37667380-37664948 E
EGN_Mt090430 20090702
Length = 356
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 121/282 (42%), Gaps = 41/282 (14%)
Query: 19 EESQGPLICGIPDDIALFCLARVPRKYHTVLKCVCRRWRDLVCNAEWHAYRGKHNLSETW 78
+ LI +PDD+A+ CLARVPR +HT L V + L+ ++ + R ++
Sbjct: 3 KNQNSNLIPSLPDDVAINCLARVPRSHHTTLTLVSKPIHSLLSSSLFFTARSLIPSTQHI 62
Query: 79 IYALCRDKFERICCYVLDPDSSRRSWKLIQGLPPRCLKRKGIGFEALGKKLLSVRWLWLV 138
+Y R + + + L ++ R L P G + + K+ +L+
Sbjct: 63 LYLSLRTRSTSLQFFTLH--NNHRLLPLPPLPSPTI----GSAYAVIHHKI------YLI 110
Query: 139 GRCY**SLLL*YF*QLMD*SCFLVYCKKLKNNFGIVKLPTPLFRC---YFACEVLDGRIY 195
G + +++ C+ + LP P R + A V+DG+IY
Sbjct: 111 GGS---------VNDVPSRHVWILDCRFHR------WLPGPSMRVAREFAAAGVIDGKIY 155
Query: 196 AIGG-LGSKLSDPHSW-DTFDPHKNSWESHSDGNVIPD--VEDSIVLDGKIYIRCGASSV 251
IGG + S +W + FDP N WES I + + S V+DGK+Y V
Sbjct: 156 VIGGCVPDNFSRSANWSEVFDPVNNRWESVPSPPEIREKWMHASAVVDGKVYAMADRGGV 215
Query: 252 SSHVYAVLYEPSNGTWQHADADMVSGWRGPAVVVDGTLYVLD 293
S ++P NG W+ ++ GWRG A VVDG LY D
Sbjct: 216 S-------FDPYNGAWESVGRELDIGWRGRATVVDGILYCYD 250
>IMGA|Medtr2g008570.1 Cyclin-like F-box;
chr02_pseudomolecule_IMGAG_V3 1657223-1654852 E
EGN_Mt090430 20090702
Length = 476
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 20 ESQGPLICGIPDDIALFCLARVPRKYHTVLKCVCRRWRDLVCNAEWHAYRGKHNLSETWI 79
E LI +PD+I+ LARVPR ++ LK V R W+ + ++E R + +E W+
Sbjct: 38 EDDSRLIPSLPDEISAQILARVPRIHYLNLKSVSRAWKAALASSELFCLRKELGTTEEWL 97
Query: 80 YALCRDKFERICCYVLDPDSSRRSWKLIQGLPPRCLKRKG-IGFEALGKKLLSVRWLWLV 138
Y L + ++ Y LDP S + W+ + +P ++ + G A+ ++ S ++
Sbjct: 98 YILTKVNDNKLLWYALDPISGK--WQRLPPMPNVFVEDEAKKGLAAIPHRMWS-----ML 150
Query: 139 GRCY**SLLL*YF*QLMD*SCFLVYCKKLKNNFGIVKLPTPLFRCYFACEVLDGRIYAIG 198
G ++ D V K + ++P C + +DG IYA+G
Sbjct: 151 GSSI----------KIAD-----VIMKWFIRKDALDQMPF----CGCSIGAVDGCIYALG 191
Query: 199 GLGSKLSDPHSWDTFDPHKNSWESHSDGNVIPDVEDSIVLDGKIYIRCGASSVSSHV--- 255
G SK S S +DP NSW S +V + VL+ K+Y+ G + +
Sbjct: 192 GF-SKASAMKSVWRYDPVTNSWTEGSPMSVGRAYSKTGVLNNKLYVVGGVTRGRGGLNPL 250
Query: 256 -YAVLYEPSNGTWQH 269
A +Y+P GTW
Sbjct: 251 QSAEVYDPHTGTWSQ 265
>IMGA|Medtr3g103600.1 Cyclin-like F-box; Galactose oxidase, central;
chr03_pseudomolecule_IMGAG_V3 25532315-25530630 E
EGN_Mt090430 20090702
Length = 372
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 127/312 (40%), Gaps = 43/312 (13%)
Query: 15 ISQLEESQGPLICGIPDDIALFCLARVPRKYHTVLKCVCRRWRDLVCNAEWHAYRGKHNL 74
I L++ P++ G+PDD+A +CLA VPR + V ++WR + + E+ R L
Sbjct: 25 IEALDKDDSPILPGLPDDVAKYCLALVPRSNFPAMGGVSKKWRLFIRSKEFVMVRKLAGL 84
Query: 75 SETWIYALCRDKFERICCYVLDPDSSRRSWKLIQGLPPRCLK---RKGIGFEALGKKLLS 131
E W+Y C LD + W+++ L +C G + G +L+
Sbjct: 85 LEEWLY-----------CLTLDSEGRESHWEVMDSLGRKCRSLPPMPGPAKASFGVVVLN 133
Query: 132 VRWLWLVGRCY**SLLL*YF*QLMD*SCFLVYCKKLKNNFGIVKLPTPLFRCYFACEVLD 191
+ L + G ++ ++ +L +L N + R FAC +D
Sbjct: 134 GKLLIMAGYSAIEGTVV-ASDEVYQYDSYLNSWSRLSN--------MNVARYDFACAEVD 184
Query: 192 GRIYAIGGLGSKLSDPHSWDTFDPHKNSWESHSDGNVIPDVED------SIVLDGKIYIR 245
G +Y +GG G + S + +DP + W +I + + + K+Y+
Sbjct: 185 GLVYIVGGYGVNGDNLSSVEMYDPDTDKW------TLIESLRRPRWGCFACGFEDKLYVM 238
Query: 246 CGASS--VSSHVYAVLYEPSNGTWQHADAD--MVSGWRGPAVVVDGTLYVLDQSSGTRLM 301
G SS + + + +Y P +W MV+ V++ L+ ++ + +L
Sbjct: 239 GGRSSFTIGNSKFVDIYNPEKHSWCEIKNGCVMVTA----HAVLEKKLFCIEWKNQRKLA 294
Query: 302 MWQKDKRVWVAV 313
++ + W V
Sbjct: 295 IFSPENNSWTMV 306