Jatropha Genome Database

JcCA0141541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141541.10 - phase: 0 
         (392 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g064590.1 Protein of unknown function DUF6, transmemb...    82   5e-16

>IMGA|Medtr7g064590.1 Protein of unknown function DUF6,
           transmembrane chr07_pseudomolecule_IMGAG_V3
           13051144-13045818 E EGN_Mt090430 20090702
          Length = 441

 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 172/406 (42%), Gaps = 30/406 (7%)

Query: 2   SWRYKAGLFLISAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPIA----FLK 57
           +W++  GL  I AV IIW+ ++ V Q +      PF VTY+  SL VV +PI     +L+
Sbjct: 11  AWKWGLGLIYIIAVAIIWIAASFVVQSVVDAGVSPFLVTYICNSLFVVLIPIVEIGRYLE 70

Query: 58  DWICKMIXXXXXXXXXXXXXLNESSDGL---NSPLSRKIFEM----ELQGTLSKKGSEAD 110
           D    ++             L ES   +   ++  S ++ E     E+ G + +      
Sbjct: 71  DSYGSLLFWKSDKSLKGR--LGESEQAILLRDNEASGEVVESLVIDEVDGIVDRNDGSEL 128

Query: 111 LSSQAEAKPLVPRXXXXXXXXXXXXELTAR----EIATYGFYIAPIWFVTEYLSNAALAR 166
           L S      LV R            +   R     +A     I P WF  +   N +L  
Sbjct: 129 LPSDDVVGGLVGRVGLVENVDQKGLDEKGRWTRCRVAKVSLLICPFWFFAQLTFNLSLKY 188

Query: 167 XXXXXXXXXXXXXXXXXXXIGVFLGQDTLNAAKVVAVFVSMAGVAMTTLGKTWAADDSQL 226
                              + + L  +     K+ +V + M G  + +LG      DSQ 
Sbjct: 189 TTVTSNTILSSASSLFTFLVSLALLGEKFAWLKLFSVLLCMGGTIIVSLG------DSQS 242

Query: 227 SASINGKRSLVGDLFGLLSAMSYGLF-TVLLKKFAGEEGE--RVDVQKLFGYIGLFTLVA 283
                    L+GD+F L SA  Y ++ T++ KK   +EG+     + +  G++GLF ++ 
Sbjct: 243 GLRTVASNPLLGDIFALSSAGLYAVYITLIRKKLNDDEGKNGEASMAQFLGFLGLFNVLL 302

Query: 284 LWWLVWPLTALGIEPKFTIPHSAKVDEVVIANGFIGSVLSDYFWALCVVWTTPLVATLGM 343
              +   L     EP + +  + K   ++I  G + +VLSDY WA  V+ T+  VAT G+
Sbjct: 303 FLPVALILNFTKAEPFYML--TWKQLGLIIGKGLLDNVLSDYLWAKAVLLTSTTVATAGL 360

Query: 344 SLTIPLAMVADMMIHGRHYSAIYILGSAQVFAGFVIANL-SDWFSK 388
           ++ +PLA + D  I G     +  LG+  V  GF   N+ ++ FSK
Sbjct: 361 TIQVPLAAIVD-TITGHSPPFMNYLGAVAVMIGFAGINIPAEIFSK 405