Jatropha Genome Database

JcCA0141381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141381.10 + phase: 1 /partial
         (220 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g071490.1 Proteasome alpha-subunit chr02_pseudomolecu...   430   e-121
IMGA|Medtr7g076140.1 Proteasome alpha-subunit chr07_pseudomolecu...   142   1e-34
IMGA|Medtr8g089500.1 Proteasome alpha-subunit chr08_pseudomolecu...   140   4e-34
IMGA|Medtr5g016520.1 Proteasome alpha-subunit chr05_pseudomolecu...   139   9e-34
IMGA|Medtr4g008970.1 20S proteasome, A and B subunits chr04_pseu...    84   4e-17
IMGA|Medtr4g076010.1 20S proteasome, A and B subunits chr04_pseu...    71   5e-13
IMGA|Medtr3g156160.1 20S proteasome, A and B subunits chr03_pseu...    56   1e-08
IMGA|Medtr6g013750.1 20S proteasome, A and B subunits chr06_pseu...    53   1e-07
IMGA|Medtr8g089220.1 hypothetical protein chr08_pseudomolecule_I...    50   6e-07

>IMGA|Medtr2g071490.1 Proteasome alpha-subunit
           chr02_pseudomolecule_IMGAG_V3 16445494-16437330 E
           EGN_Mt090430 20090702
          Length = 246

 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/217 (93%), Positives = 213/217 (98%)

Query: 3   MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKL 62
           MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAA ITSIGVRG DSVCVVTQKKVPDKL
Sbjct: 1   MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGNDSVCVVTQKKVPDKL 60

Query: 63  LDQTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIAD 122
           LDQTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFR ++GYEMPVDVLAKWIAD
Sbjct: 61  LDQTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRHKFGYEMPVDVLAKWIAD 120

Query: 123 KSQVYTQHAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLE 182
           KSQVYTQHAYMRPLGVVAMVLGID+ENGPQLYKCDPAGH++GHKATSAG K+QEAINFLE
Sbjct: 121 KSQVYTQHAYMRPLGVVAMVLGIDDENGPQLYKCDPAGHYFGHKATSAGSKDQEAINFLE 180

Query: 183 KKMKNDPAFSYEETVQTAISALQSILQEDFKATEIEV 219
           KKMKNDP+F+Y+ETVQTAI+ALQS+LQEDFKATEIEV
Sbjct: 181 KKMKNDPSFTYDETVQTAIAALQSVLQEDFKATEIEV 217


>IMGA|Medtr7g076140.1 Proteasome alpha-subunit
           chr07_pseudomolecule_IMGAG_V3 15428460-15425836 E
           EGN_Mt090430 20090702
          Length = 250

 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 114/199 (57%), Gaps = 4/199 (2%)

Query: 11  YDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLD-QTSVT 69
           YD   TIFSPEGRL+QVEYA +A+  A  T+IG+  KD V +V +KKV  KLL   TS  
Sbjct: 5   YDSRTTIFSPEGRLYQVEYAMEAIGNAG-TAIGILSKDGVVLVGEKKVTSKLLQTSTSTE 63

Query: 70  HLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQ 129
            ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ
Sbjct: 64  KMYKIDDHVACAVAGIMSDANILINTARIQAQRYSFAYQEPMPVEQLVQSLCDTKQGYTQ 123

Query: 130 HAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDP 189
              +RP GV  +  G D+  G QLY  DP+G++ G KA++ G   Q A + L++  K+D 
Sbjct: 124 FGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKASAIGANNQAAQSILKQDYKDD- 182

Query: 190 AFSYEETVQTAISALQSIL 208
             + EE VQ A+  L   +
Sbjct: 183 -ITREEAVQLALKVLSKTM 200


>IMGA|Medtr8g089500.1 Proteasome alpha-subunit
           chr08_pseudomolecule_IMGAG_V3 19250703-19248183 F
           EGN_Mt090430 20090702
          Length = 249

 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 115/211 (54%), Gaps = 5/211 (2%)

Query: 11  YDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLDQTSVTH 70
           YDR IT+FSP+G LFQVEYA +AV+     ++GVRG D+V +  +KK   KL D  SV  
Sbjct: 4   YDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGIDNVVLGVEKKSTAKLQDSRSVRK 62

Query: 71  LFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQH 130
           +  +  ++ L   G+ ADAR L+ +AR E    R        V+ + + IA   Q YTQ 
Sbjct: 63  IVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPCTVEYITRHIAGLQQKYTQS 122

Query: 131 AYMRPLGVVAMVLGIDEENG-PQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDP 189
             +RP G+  +++G D   G P LY+ DP+G F   KA + G        FLEK  K   
Sbjct: 123 GGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFKET- 181

Query: 190 AFSYEETVQTAISALQSILQEDFKATEIEVL 220
             S +ETV+ AI AL  +++   K  E+ V+
Sbjct: 182 --SGQETVKLAIRALLEVVESGGKNIEVAVM 210


>IMGA|Medtr5g016520.1 Proteasome alpha-subunit
           chr05_pseudomolecule_IMGAG_V3 5824681-5827357 E
           EGN_Mt090430 20090702
          Length = 250

 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 4/199 (2%)

Query: 11  YDRHITIFSPEGRLFQVEYAFKAVKAAAITSIGVRGKDSVCVVTQKKVPDKLLD-QTSVT 69
           YD   TIFSPEGRL+QVEYA +A+  A  T+IG+  KD V +V +KKV  KLL   TS  
Sbjct: 5   YDSRTTIFSPEGRLYQVEYAMEAIGNAG-TAIGILSKDGVVLVGEKKVTSKLLQTSTSTE 63

Query: 70  HLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQ 129
            ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ
Sbjct: 64  KMYKIDDHVACAVAGIMSDANILINTARIQAQRYSFAYQEPMPVEQLVQSLCDTKQGYTQ 123

Query: 130 HAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDP 189
              +RP GV  +  G D+  G QLY  DP+G++ G KA + G   Q A + L++  K+D 
Sbjct: 124 FGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKAGAIGANNQAAQSILKQDYKDD- 182

Query: 190 AFSYEETVQTAISALQSIL 208
             + EE V  A+  L   +
Sbjct: 183 -ITREEAVNLALKVLSKTM 200


>IMGA|Medtr4g008970.1 20S proteasome, A and B subunits
           chr04_pseudomolecule_IMGAG_V3 1325684-1329201 E
           EGN_Mt090430 20090702
          Length = 570

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 41  SIGVRGKDSVCVVTQKKVPDKLLDQTSVTHLFPITKYLGLLATGMTADARTLVQQARNEA 100
           +IG+R K  V +    K   +L      T +F I  ++G+   G     R L +  R+E 
Sbjct: 327 AIGLRSKTHVVLACVNKANSELYYHQ--TKIFKIDDHIGVAIAG---HGRVLSRYMRSEC 381

Query: 101 AEFRFRYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEENGPQLYKCDPAG 160
             + + Y   +PV  L   +A+K+QV TQ ++ RP GV  +V G+DE      Y C P+G
Sbjct: 382 VNYNYTYESPLPVGRLVVQLANKAQVCTQRSWKRPYGVGLLVAGLDESEAHLYYNC-PSG 440

Query: 161 HFYGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSILQ 209
           +++ ++A +   + Q A  +LE+K  N  A S E+ ++ A+ A +  LQ
Sbjct: 441 NYFEYQAVAIDSRSQAAKTYLERKFNNFTASSREDLIKDALIATRESLQ 489


>IMGA|Medtr4g076010.1 20S proteasome, A and B subunits
           chr04_pseudomolecule_IMGAG_V3 14986971-14989745 E
           EGN_Mt090430 20090702
          Length = 389

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 20/210 (9%)

Query: 14  HITIFSPEGRLFQVEYAFKAVKAA------AITSIGVRGKDSVCVVTQKKVPDKLLDQTS 67
           ++  +SP      V+Y  +A+KA          +I +R K  V +    K   +L     
Sbjct: 91  NLNTWSP------VKYPIEALKAKYEAFKQGSAAISLRSKTHVVLACVNKANSELY---- 140

Query: 68  VTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVY 127
            +H   I K    +   +      L    R E   + + Y   +PVD L   + +K+QV 
Sbjct: 141 -SHQMKILKVDNHIGVAIAGHGCVLSWYMRYECINYNYTYKSVLPVDRLVVQLTNKAQVC 199

Query: 128 TQHAYMRPLGVVAMVLGIDEENGP--QLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKM 185
           TQ ++ RP     +V G+D  + P   LY   P+G+++ H+A + G +   A  +LE+K+
Sbjct: 200 TQRSWKRPYDAGLLVAGLDGLDKPLAHLYYNCPSGNYFEHQAFAIGSRSLPAKTYLERKV 259

Query: 186 KNDPAFSYEETVQTAISAL-QSILQEDFKA 214
            N  A S ++ ++ A+ A+ +S+L E  ++
Sbjct: 260 NNFAASSRKDLIKNALIAIRESLLGEKLRS 289


>IMGA|Medtr3g156160.1 20S proteasome, A and B subunits
           chr03_pseudomolecule_IMGAG_V3 40928839-40926599 E
           EGN_Mt090430 20090702
          Length = 234

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 126 VYTQHAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKM 185
           + TQ ++ RP GV  +V G+DE      Y C P+G+++ ++A + G + Q A+ +LE K 
Sbjct: 73  ICTQRSWKRPYGVGLLVGGLDESGAHLYYNC-PSGNYFEYQAFAIGSRSQAAMTYLECKF 131

Query: 186 KNDPAFSYEETVQTAISALQSILQ 209
            N  A S E+ ++ A+ A +  LQ
Sbjct: 132 NNFTASSREDLIKDALIATRESLQ 155


>IMGA|Medtr6g013750.1 20S proteasome, A and B subunits
           chr06_pseudomolecule_IMGAG_V3 3010667-3005410 E
           EGN_Mt090430 20090702
          Length = 336

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 15/186 (8%)

Query: 40  TSIGVRGKDSVCVVTQKKV--PDKLLDQTSVTHLFPITKYLGL----LATGMTADARTLV 93
           T+IG++ K+ V +  +K++  P   L    V ++  I   + +      TG  A+A  LV
Sbjct: 138 TAIGLKFKEGVVLAAEKRITWPTSPLYPGIVQNIMEIDNNICIAVTVTVTGSIANASKLV 197

Query: 94  QQARNEAAEFRFRYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEENGPQL 153
            +AR  A          M VD + + ++     Y     + P  VV+++ G D  N P L
Sbjct: 198 GEARTLALANNISRCQPMVVDSMCQKLS-----YELADQIHPF-VVSLIAGHDN-NRPSL 250

Query: 154 YKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSILQEDFK 213
           Y  DP G F    A + GL+ + A   LE++   D      ET+  A+S L+ ++ E   
Sbjct: 251 YYSDPFGSFQQCNAKAIGLRSEGADRSLEEQFNQDLTLEKAETI--ALSILKQVMGEKVT 308

Query: 214 ATEIEV 219
              +++
Sbjct: 309 PNNVDI 314


>IMGA|Medtr8g089220.1 hypothetical protein
          chr08_pseudomolecule_IMGAG_V3 19121047-19122757 E
          EGN_Mt090430 20090702
          Length = 59

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/24 (91%), Positives = 23/24 (95%)

Query: 60 DKLLDQTSVTHLFPITKYLGLLAT 83
          DKLLD TSVTHLFP+TKYLGLLAT
Sbjct: 23 DKLLDHTSVTHLFPVTKYLGLLAT 46