Jatropha Genome Database

JcCA0140901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140901.10 + phase: 0 /pseudo/partial
         (99 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g013750.1 Casein kinase II, regulatory subunit chr05_...    65   1e-11
IMGA|Medtr5g013750.2 Casein kinase II, regulatory subunit chr05_...    64   2e-11

>IMGA|Medtr5g013750.1 Casein kinase II, regulatory subunit
          chr05_pseudomolecule_IMGAG_V3 4206290-4210104 E
          EGN_Mt090430 20090702
          Length = 286

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 1  MYKDXXXXXXXXXXXEIERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQ 60
          MY++            ++RKRIND LDK LE+SSPSTSR +N   KDR S  S    K  
Sbjct: 1  MYRERGGVGSKAEVASVDRKRINDVLDKQLERSSPSTSRTINGG-KDRSSSSSLLTVK-- 57

Query: 61 LDHRDPRSASLSKNKCSDV 79
           DHRDPRS +LSKN   D 
Sbjct: 58 -DHRDPRSNTLSKNASDDA 75


>IMGA|Medtr5g013750.2 Casein kinase II, regulatory subunit
          chr05_pseudomolecule_IMGAG_V3 4206290-4210104 E
          EGN_Mt090430 20090702
          Length = 281

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 4/74 (5%)

Query: 1  MYKDXXXXXXXXXXXEIERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQ 60
          MY++            ++RKRIND LDK LE+SSPSTSR +N   KDR S  S    K  
Sbjct: 1  MYRERGGVGSKAEVASVDRKRINDVLDKQLERSSPSTSRTINGG-KDRSSSSSLLTVK-- 57

Query: 61 LDHRDPRSASLSKN 74
           DHRDPRS +LSKN
Sbjct: 58 -DHRDPRSNTLSKN 70