Jatropha Genome Database
- JcCA0140751.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0140751.20 - phase: 2 /TE/partial
(212 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 150 5e-37
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 146 7e-36
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 144 4e-35
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 144 4e-35
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 138 2e-33
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 114 3e-26
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 96 1e-20
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 89 2e-18
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 87 6e-18
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 80 7e-16
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 74 5e-14
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 71 4e-13
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 69 2e-12
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 69 2e-12
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 66 1e-11
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 63 1e-10
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 60 6e-10
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 60 1e-09
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 57 7e-09
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I... 56 1e-08
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 53 1e-07
IMGA|AC235488_16.1 Polynucleotidyl transferase, Ribonuclease H f... 48 3e-06
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 48 3e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 110/201 (54%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
DI + +S+++ NP H R LRY+KS GL + + L G+ DAD+AG
Sbjct: 1042 DITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGC 1101
Query: 61 HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
DTR+S T F LG+ ISW +K+Q TVS S++ WL+ L+NDLH
Sbjct: 1102 LDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLNDLHI 1161
Query: 121 PVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIAD 180
LYCDNQSA+ +A NPVFH RTKH+E+ H VREK+ +++ V + QIAD
Sbjct: 1162 TCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVSSQDQIAD 1221
Query: 181 LLTKSLNVGKFEHFRCQLDVI 201
TK+L F +L +I
Sbjct: 1222 FFTKALLPKTFSLLLSKLGLI 1242
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 108/192 (56%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
DI Y +S+++ P H R+LRY+K+ GL + + +L GY DAD+AG
Sbjct: 1170 DITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGC 1229
Query: 61 HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
DTRRS + F LG+ ISW +K+Q TVS S++ WLI L+ DLH
Sbjct: 1230 LDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIYLLQDLHV 1289
Query: 121 PVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIAD 180
L+CDNQSA+ +A NPVFH RTKH+E+ H VREK+ +++ V + +Q+AD
Sbjct: 1290 TCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVSSKEQVAD 1349
Query: 181 LLTKSLNVGKFE 192
TKSL+ F
Sbjct: 1350 FFTKSLHPQPFN 1361
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 110/202 (54%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
DI + +S+++ P + H R+L+Y+KS GL + + L G+ DAD+AG
Sbjct: 1196 DITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGC 1255
Query: 61 HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
DTRRS + F LG+ ISW +K+Q TVS S++ W++ L+ DLH
Sbjct: 1256 IDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYLLKDLHT 1315
Query: 121 PVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIAD 180
LYCDNQSAI +A NPVFH RTKH+E+ H +R+K+ +++ V + Q+AD
Sbjct: 1316 TCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQDQVAD 1375
Query: 181 LLTKSLNVGKFEHFRCQLDVIQ 202
TK+L F +L +I
Sbjct: 1376 FFTKALLPKPFNILLSKLGLIN 1397
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 103/178 (57%)
Query: 23 VVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGDHDTRRSTTRYLFKLGSGTISWC 82
+ R+LRY+KS+ G++ K D +LV YCD+D+A TRRST+ YL KLGS ISW
Sbjct: 125 LTMRVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRSTSGYLMKLGSAPISWK 184
Query: 83 SKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENP 142
+K+Q TVS S++ WL L++ L D L CDNQ+A+ LA NP
Sbjct: 185 TKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPTVLLCDNQAAMHLAANP 244
Query: 143 VFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADLLTKSLNVGKFEHFRCQLDV 200
V+H RTKH+EV HF+R + + I V T KQ AD+ TK+L +F+ +L V
Sbjct: 245 VYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKALGAKQFQELTFKLGV 302
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 110/201 (54%)
Query: 2 IFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGDH 61
I +A +S+++ +P + H RILRY+K + GL + + L GY DAD+AG
Sbjct: 1188 ITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCL 1247
Query: 62 DTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQP 121
D+RRS + F LG ISW +K+Q TVS S++ WL+ L++DLH
Sbjct: 1248 DSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLYLLHDLHVT 1307
Query: 122 VDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADL 181
LYCDNQSA+ +A NPVFH RTKH+E+ H VREK+ +++ V + Q+AD
Sbjct: 1308 TVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVTSADQLADF 1367
Query: 182 LTKSLNVGKFEHFRCQLDVIQ 202
TK L F +L ++
Sbjct: 1368 FTKPLLPQPFHTLLFKLGMLN 1388
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCK---LVGYCDADY 57
DI Y+VG++S++M NP K H ++I+RY+ T+ YG+L+ + ++ + ++ Y DAD+
Sbjct: 391 DISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADW 450
Query: 58 AGDHDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMND 117
D RR TT +LF L ISW SK+QP V+LS+ + WL ++
Sbjct: 451 CRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQ 510
Query: 118 LHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKV 162
+ + L DN+ AI LA+N + H ++KH+E +H++R++V
Sbjct: 511 SMIKLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQV 555
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 34/201 (16%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
DI + +S+++ P + H R+LRY+K+ GL + + + GY DAD+AG
Sbjct: 537 DITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGC 596
Query: 61 HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
DTRRS + F LG ISW +K+Q TVS S++
Sbjct: 597 RDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSE------------------------- 631
Query: 121 PVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIAD 180
+ ++ NPVFH RTKH+E+ H VREK+ +++ + + Q+AD
Sbjct: 632 ---------AEYRALGAATSNPVFHERTKHLEIDCHIVREKLAAGIMKLLPISSKNQLAD 682
Query: 181 LLTKSLNVGKFEHFRCQLDVI 201
TKS+ F +L ++
Sbjct: 683 CFTKSILPQPFNSLLFKLGLV 703
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 26 RILRYVKSTIDYGLLYKKGKDCKLVGYCDADYA-GDHDTRRSTTRYLFKLGSGTISWCSK 84
R+L Y+K GL + + ++ GY +AD+A G DTRRS + F W S
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCF------FCWSSS 55
Query: 85 RQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENPVF 144
+L++ L L+ DL LYCDNQSAI +A NPVF
Sbjct: 56 EAEYRALASATCELQR----------LTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVF 105
Query: 145 HARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADLLTKSLNVGKFEHFRCQLDVI 201
H TKH+E+ H VREK+ ++ + + Q+AD TKSL F +L ++
Sbjct: 106 HECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGML 162
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 36/168 (21%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
DI +A +S++M P +H +LRY++ GL + + + +L+G+ DAD+ G
Sbjct: 359 DISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLLGFSDADWGGC 418
Query: 61 HDTRRSTT------RYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQL 114
D+RRS R+LF L SG IS S P ++
Sbjct: 419 VDSRRSLAFQEAIHRFLFFLRSG-ISCFSISHPRTPMAHIRLSI---------------- 461
Query: 115 MNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKV 162
LYCDNQSA+ +A NPVF+ RTKH+++ H VREKV
Sbjct: 462 -------------LYCDNQSALHIAANPVFYERTKHLDIDCHIVREKV 496
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLYKKGKDCKLVGYCDADYAGD 60
DI + +S+++ P + H R+L+Y+K GL + + L G+ D D+AG
Sbjct: 127 DITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSDVDWAGC 186
Query: 61 HDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDLHQ 120
D+RRS + F +G+ ISW +K+Q TVS S++ W++ L+ DL+
Sbjct: 187 VDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYLLKDLNI 246
Query: 121 PVDYAVPLYCDNQS 134
L+CDNQ+
Sbjct: 247 QSSKLPVLFCDNQN 260
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%)
Query: 110 WLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEM 169
WL L+ D + LYCD+QSA +A N FH RTKH+E+ H VREK+ Q+ +
Sbjct: 270 WLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHERTKHIELDCHIVREKLQQKLFHL 329
Query: 170 RQVKTDKQIADLLTKSLNVGKFEHFRCQL 198
V + +Q+AD+LTK L+ F +F +L
Sbjct: 330 LPVSSSQQLADVLTKPLDPLPFSNFISKL 358
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 115 MNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKT 174
M +LH V + L DN+S I LA+NP+ R+KH++ +HF+RE+V +E IE+ T
Sbjct: 1 MKELHCEVKKPLKLKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPT 60
Query: 175 DKQIADLLTKSLNVGKFEHFRCQLDVIQ 202
+ Q+ D TK+ + +F R +L +I+
Sbjct: 61 EVQLGDGFTKAFKIDRFTCLRDKLGLIE 88
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 125 AVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADLLTK 184
AV L DN S I LA+NP+ H R+KH+E+ +H++RE+V + ++++ K++ QIAD+LTK
Sbjct: 24 AVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTK 83
Query: 185 SLNVGKFEHFRCQLDV 200
+ + F R +++
Sbjct: 84 GVKIEVFTKPRDSMEI 99
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 125 AVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADLLTK 184
AV L DN S I LA+NP+ H R+KH+E+ +H++RE+V + ++++ K++ QIAD+LTK
Sbjct: 115 AVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTK 174
Query: 185 SLNVGKFEHFRCQLDV 200
+ + F R +++
Sbjct: 175 GVKIEVFTKPRDSMEI 190
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 123 DYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEIEMRQVKTDKQIADLL 182
+ AV L DN+SAI LA+N +FH + KHVE +HF+R++V + E+ + T Q+ DL
Sbjct: 9 EVAVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLF 68
Query: 183 TKSLNVGKFEHFRCQLDVIQ 202
TK+L +F R ++ V+
Sbjct: 69 TKALKRDQFLKLRREIRVVN 88
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 59 GDHDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXXXXXXXXSTWLIQLMNDL 118
GD D ++STT YLF +G+ ISW SK+Q V+LS++ + W+ L+ +L
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 119 HQPVDYAVPLYCDNQSAIRLAENPVFHAR 147
+ + L DN+ AI LA+ P+ H +
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 42 KKGKDCKLVGYCDADYAGDHDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTTXXXXXXX 101
KKG+ KL GY D+D GD RRST+ LFK ISWC+KRQP +LS+
Sbjct: 7 KKGES-KLEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAG 65
Query: 102 XXXXXXSTWLIQLMNDLH 119
+ WL ++ +L+
Sbjct: 66 TFAACQAIWLDNVIKELN 83
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 110 WLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQE 165
W++ ++D P + +YCDN S++ + NPVFH RTKH+E+ H VR+K+ E
Sbjct: 13 WILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVVRDKIKHE 68
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 108 STWLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEI 167
+ W+ L +L+ + L DN+S I LA++P+ H +KH+E +HF+R++V + ++
Sbjct: 7 ALWIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNKMKL 66
Query: 168 EMRQVKTDKQIADLLTKSLNVGKFEHFRCQLDVIQRMGG 206
++ T+ Q+A++ TK L F+ + +L V++R+
Sbjct: 67 DLEYCNTEVQLANIFTKPLKKAMFDELK-KLMVMKRLTS 104
>IMGA|Medtr4g104330.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
EGN_Mt090430 20090702
Length = 196
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 DIFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLY---KKGKDCKLVGYCDADY 57
DI +A+G+ SR+M P K H V + ILRY+K I YG+L+ + + +L G+ D D+
Sbjct: 56 DICFAIGLASRFMSKPMKTHFLVAKCILRYIKGKIQYGILFPISQMTEKLELEGFLDDDW 115
Query: 58 AGDHDTRR 65
GD R
Sbjct: 116 YGDEVERE 123
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 2 IFYAVGVMSRYMQNPKKHHLEVVRRILRYVKSTIDYGLLY---KKGKDCKLVGYCDAD 56
I Y VG++SR+M NP K + ++ILRY+ ST+ YG+L+ + + + GY DAD
Sbjct: 74 ISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATEQLDMEGYSDAD 131
>IMGA|AC235488_16.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative AC235488.1 64684-64944 H EGN_Mt090430
20090702
Length = 86
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 108 STWLIQLMNDLHQPVDYAVPLYCDNQSAIRLAENPVFHARTKHVEVHYHFVREKVLQEEI 167
+ WL +M L+ D + L D++S I LA++ V H R+KH+E +H++R + +E++
Sbjct: 6 AQWLSMMMQYLNLKEDEKMRLLLDSKSTIDLAKHLVAHGRSKHIETRFHYLRAQGTKEKL 65
Query: 168 EMRQVK--------TDKQIAD 180
E+ ++ T+K I D
Sbjct: 66 ELENLQDRIASGRLTNKTIED 86
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 27/38 (71%)
Query: 57 YAGDHDTRRSTTRYLFKLGSGTISWCSKRQPTVSLSTT 94
+AG TRRSTT Y LGS ISW SK+QPTVS S+T
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSST 45