Jatropha Genome Database

JcCA0140011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140011.10 + phase: 1 /pseudo/partial
         (213 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g009160.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG...   176   8e-45
IMGA|Medtr7g080790.1 Harpin-induced 1 chr07_pseudomolecule_IMGAG...    49   3e-06
IMGA|Medtr8g005060.1 Harpin-induced 1 chr08_pseudomolecule_IMGAG...    47   6e-06

>IMGA|Medtr5g009160.1 Harpin-induced 1 chr05_pseudomolecule_IMGAG_V3
           1939418-1940204 E EGN_Mt090430 20090702
          Length = 187

 Score =  176 bits (446), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 99/138 (71%), Gaps = 23/138 (16%)

Query: 76  QYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSS 135
           QY SVKNPN+ +FSHYDS+ QLL  G Q+GFMF+PAGKI+A RTQ+MAATF VQS PL+ 
Sbjct: 73  QYTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNL 132

Query: 136 SPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKA 195
            P+                       G ++GPT+EIES I M GRVRVLH+F+HHVEAKA
Sbjct: 133 EPE-----------------------GLQMGPTVEIESTIEMVGRVRVLHLFSHHVEAKA 169

Query: 196 GCRVAIAVSDGSVLGFHC 213
            CRVAIAVSDGSVLGFHC
Sbjct: 170 DCRVAIAVSDGSVLGFHC 187


>IMGA|Medtr7g080790.1 Harpin-induced 1 chr07_pseudomolecule_IMGAG_V3
           17279161-17278107 F EGN_Mt090430 20090702
          Length = 211

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 20/136 (14%)

Query: 78  VSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSSSP 137
           + V N N ASF H D T  L+Y G +VG   I AG I A  +  +     +Q+  L+S+ 
Sbjct: 90  IQVDNQNHASFKHADGTSLLMYKGVEVGDTDIYAGLIPAKGSTILPCRLTLQADKLASN- 148

Query: 138 DAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGC 197
                       G+L         G  +G  + +E+   + GRV  L     H+ AK+ C
Sbjct: 149 ----------VTGLL---------GDLMGGQLSLEAVTRIPGRVTFLGFIKKHIVAKSNC 189

Query: 198 RVAIAVSDGSVLGFHC 213
           +      D  +    C
Sbjct: 190 QFVFGFPDMEIKSQIC 205


>IMGA|Medtr8g005060.1 Harpin-induced 1 chr08_pseudomolecule_IMGAG_V3
           78271-79460 E EGN_Mt090430 20090702
          Length = 201

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 78  VSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPLSSSP 137
           VSVKNPNK  F + ++T  L Y G  +G + I AG I +G T+    T    +  L S+ 
Sbjct: 81  VSVKNPNKVGFKYSNTTAHLNYRGQLIGEVPISAGDISSGETKGFNLTLTFMADRLLSNS 140

Query: 138 DAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEAKAGC 197
                             +  +  G     T+ + + + + G+V +L     HV + A C
Sbjct: 141 QL----------------FSDITSG-----TLPLNTFLTIFGKVNILGFIKVHVISSASC 179

Query: 198 RVAIAVSDGSVLGFHC 213
             A+  S+ +V    C
Sbjct: 180 DFAVNTSNKTVGNQEC 195