Jatropha Genome Database
- JcCA0139851.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0139851.20 + phase: 2 /TE/partial
(889 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 134 2e-31
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 129 7e-30
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 127 2e-29
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 126 5e-29
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 126 5e-29
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 125 7e-29
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 122 6e-28
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 121 2e-27
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 117 3e-26
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 108 8e-24
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 107 4e-23
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 104 2e-22
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 104 2e-22
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 98 2e-20
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 95 2e-19
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 95 2e-19
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 83 5e-16
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 82 2e-15
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 81 2e-15
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 78 2e-14
IMGA|Medtr4g019480.1 Integrase, catalytic region chr04_pseudomol... 72 2e-12
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 71 2e-12
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 61 2e-09
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 60 5e-09
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 59 7e-09
IMGA|Medtr3g169320.1 Polynucleotidyl transferase, Ribonuclease H... 53 7e-07
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 20/285 (7%)
Query: 252 VHVPDMHSNLISVGRLDAENFCS-AFRNGQWKLTKGSMVVANGRKDPK--LYVMHAKLAR 308
+++P NLISV +L E C F + + + + G K LY + R
Sbjct: 454 LYLPKFAVNLISVSKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLETD-ER 512
Query: 309 DTLNVAEDDSAVEL----------WHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDC 358
+ ++V+ + VEL WH RLGH+S M + N M S + C C
Sbjct: 513 NKVSVSNISAQVELHQKHVPDGVLWHLRLGHLSHDRMICM--NKMYSYVPVSPHTACDVC 570
Query: 359 MARKQNRVAFKISQPSKMKNVLDLVHSDLCGPL-TMSYGGNRYFVTFIDDHSRKTWVYTL 417
+Q + F IS K DLVH D+ GP T S G++YF+T +DD +R W+ L
Sbjct: 571 QMCRQKILPFPISS-RNAKTAFDLVHFDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVML 629
Query: 418 KSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQ 477
K+K + K F+++VERQ +K++ I++DNG E+ F GI HQ + TPQ
Sbjct: 630 KNKSEASYQVKNFVSMVERQFERKIKMIRSDNGPEFM--LREFYDKKGIIHQRSCVYTPQ 687
Query: 478 LNGLAERMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSP 522
NG ER ++ ++ R L+ +KL K FW A+L AV+LINR P
Sbjct: 688 QNGRVERRHQHILNISRALMFQSKLPKNFWSYAVLHAVYLINRIP 732
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 150/302 (49%), Gaps = 35/302 (11%)
Query: 249 RCFVHVPDMHSNLISVGRLDAENFC-SAFRN---------------------GQWKLTKG 286
R ++V + NL+SV +L +N C F N G + L G
Sbjct: 445 RNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLG 504
Query: 287 SMVVANGRKDPKLYVMHAKLARDTLNVAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLSG 346
S V + P + + + + L LWH RLGH+S + + ++
Sbjct: 505 SQVFSQFNHQPVIALSQSSSSTTFL------PQEALWHFRLGHLSNDRLLRMQQHFPCIK 558
Query: 347 LDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLDLVHSDLCGPL-TMSYGGNRYFVTFI 405
+D + C C + ++ FK+S +K + +L+H D+ GP+ T S G++YF+T +
Sbjct: 559 VDSNSV--CDICHYSRHKKLPFKLSM-NKASHCYELIHFDIWGPISTHSIHGHKYFITAL 615
Query: 406 DDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYTGPFDAFCKXHG 465
DD+SR TW+ K+K +V + F+ +E Q K++ ++TDNG E+ P F G
Sbjct: 616 DDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMP--DFYSSKG 673
Query: 466 IRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSPCVP 525
I HQT+ +TPQ NG ER ++ ++ R LL +KL K FW ++L A+++INR P P
Sbjct: 674 IEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYIINRIP-TP 732
Query: 526 LI 527
L+
Sbjct: 733 LL 734
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 120/207 (57%), Gaps = 7/207 (3%)
Query: 322 LWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLD 381
LWH RLGH+S + + ++ +D + C C + ++ FK+S +K + +
Sbjct: 464 LWHFRLGHLSNDRLLRMQQHFPCIKVDSNSV--CDICHYSRHKKLPFKLSM-NKASHCYE 520
Query: 382 LVHSDLCGPL-TMSYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGK 440
L+H D+ GP+ T S G++YF+T +DD+SR TW+ K+K +V + F+ +E Q
Sbjct: 521 LIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNC 580
Query: 441 KLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHA 500
K++ ++TDNG E+ P F GI HQT+ +TPQ NG ER ++ ++ R LL +
Sbjct: 581 KVKTVRTDNGPEFLMP--DFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQS 638
Query: 501 KLFKRFWGEALLTAVHLINRSPCVPLI 527
KL K FW ++L A+++INR P PL+
Sbjct: 639 KLPKVFWSYSVLHAIYIINRIP-TPLL 664
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 6/206 (2%)
Query: 322 LWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLD 381
LWH RLGH+S + ++T+ + + + + C C + ++ F S S +
Sbjct: 511 LWHFRLGHLSNQRLSTMSR--LYPSIIVDNKAACDICHFARHKKLPFPHSS-SHANSKFQ 567
Query: 382 LVHSDLCGPLTMSY-GGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGK 440
L+H D+ GPL ++Y G++YF+T +DDH+R W+ LKSK +V K F+ L+E Q
Sbjct: 568 LLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHI 627
Query: 441 KLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHA 500
+ I+TDNG E+ F GI HQ + +TPQ NG ER ++ ++ R LL +
Sbjct: 628 TPKIIRTDNGSEFL--LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQS 685
Query: 501 KLFKRFWGEALLTAVHLINRSPCVPL 526
KL FW A L AV LINR P + L
Sbjct: 686 KLPLSFWSYAFLHAVFLINRVPTLVL 711
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 6/206 (2%)
Query: 322 LWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLD 381
LWH RLGH+S + ++T+ + + + + C C + ++ F S S +
Sbjct: 511 LWHFRLGHLSNQRLSTMSR--LYPSIIVDNKAACDICHFARHKKLPFPHSS-SHANSKFQ 567
Query: 382 LVHSDLCGPLTMSY-GGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGK 440
L+H D+ GPL ++Y G++YF+T +DDH+R W+ LKSK +V K F+ L+E Q
Sbjct: 568 LLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHI 627
Query: 441 KLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHA 500
+ I+TDNG E+ F GI HQ + +TPQ NG ER ++ ++ R LL +
Sbjct: 628 TPKIIRTDNGSEFL--LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQS 685
Query: 501 KLFKRFWGEALLTAVHLINRSPCVPL 526
KL FW A L AV LINR P + L
Sbjct: 686 KLPLSFWSYAFLHAVFLINRVPTLVL 711
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 6/205 (2%)
Query: 319 AVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKN 378
LWH RLGH+S + M + +++ + + + C C KQ + F S N
Sbjct: 491 VAALWHFRLGHLSNQRMIKM--SHLYPSIVHNNRDVCDICHFSKQKHLPFSSSLSHASTN 548
Query: 379 VLDLVHSDLCGPLTMS-YGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQ 437
+L+H D+ GP+++S G+RYF+T +DDHSR W+ LKSK +V K F+ ++ Q
Sbjct: 549 -FELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQ 607
Query: 438 TGKKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLL 497
+ +++DNG E+ + F HGI HQ + +TPQ NG ER ++ ++ R LL
Sbjct: 608 FHVTPKYVRSDNGPEFL--LNDFYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALL 665
Query: 498 SHAKLFKRFWGEALLTAVHLINRSP 522
+KL FW A+L AV LINR P
Sbjct: 666 YQSKLPPSFWSYAILHAVFLINRVP 690
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 115/208 (55%), Gaps = 16/208 (7%)
Query: 326 RLGHMSEKGMTTLVKNNMLSGL--DKVHLEK---CSDCMARKQNRVAFKISQPSKMKNVL 380
+LGH+S + M NM+S L + V K C C KQ + F IS N
Sbjct: 470 KLGHLSHQRM------NMMSSLYSNIVSDNKNSVCDICHFAKQKHLPFSISTSHATSN-F 522
Query: 381 DLVHSDLCGPLTMS-YGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTG 439
+L+H D+ GPL++S G++YF+T +DDHSR W+ +LK+K V K F+ +V+ Q
Sbjct: 523 ELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFH 582
Query: 440 KKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSH 499
+CI++DNG E+ +F + GI HQ + +TPQ NG ER + ++ R LL
Sbjct: 583 VTPKCIRSDNGPEFL--ILSFYESLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQ 640
Query: 500 AKLFKRFWGEALLTAVHLINRSPCVPLI 527
+KL +W ALL AV LINR P PL+
Sbjct: 641 SKLPASYWSYALLHAVFLINRKP-TPLL 667
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 121 bits (303), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
Query: 349 KVHLEKCSDCMARKQNRVAFKISQPSKMKNVLDLVHSDLCGPLTM-SYGGNRYFVTFIDD 407
K+ + C+ C+ K +R AFK + K+VL++VHSD+ GP+ + +Y GNRYF+TF+D+
Sbjct: 9 KIVEKSCNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDE 68
Query: 408 HSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYTGP-FDAFCKXHGI 466
+S+ W+Y +K K L+VFK+F L E+Q+G KL+ + T GGEYT F+++C GI
Sbjct: 69 YSKMLWLYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSKDFESYCTNQGI 128
Query: 467 RHQTTPPKTP 476
H+ T P TP
Sbjct: 129 IHEVTTPYTP 138
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 6/200 (3%)
Query: 322 LWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLD 381
LWH RLGH+S K + + + +D VH C C KQ ++ F S S +
Sbjct: 491 LWHFRLGHVSPKRLIHMSQLYPTLTVD-VH-ATCDICHFAKQKKLPFSNSI-SVASIKFE 547
Query: 382 LVHSDLCGPLTM-SYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGK 440
L+H D+ GPL++ S +RYF+T +DD+SR W+ LKSK +V K F+NL++ Q
Sbjct: 548 LLHFDIWGPLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNI 607
Query: 441 KLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHA 500
+ +++DNG E+ +F GI H + +TPQ NG ER ++ ++ R LL +
Sbjct: 608 TPKTVRSDNGPEFL--LHSFYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQS 665
Query: 501 KLFKRFWGEALLTAVHLINR 520
KL +W ALL A +INR
Sbjct: 666 KLPVSYWSYALLHATFIINR 685
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 103/197 (52%), Gaps = 14/197 (7%)
Query: 325 KRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLDLVH 384
KRL HMS T V N+ C C KQ +++F S S + +L+H
Sbjct: 494 KRLNHMSHLYPTLTVDNH----------ATCDICQFAKQKKLSFPTSV-SVASSKFELLH 542
Query: 385 SDLCGPLTM-SYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGKKLR 443
D+ GPL + S +RYF+T +DD+S W+ LKSK +V K F+NL+ Q +
Sbjct: 543 FDIWGPLAVTSIHNHRYFLTILDDYSIFFWIVLLKSKYEVSQHVKNFINLIHTQYHITPK 602
Query: 444 CIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHAKLF 503
+++DNG E+ ++F GI H + +TPQ NG ER ++ ++ R LL +KL
Sbjct: 603 VVRSDNGPEFL--LNSFYASKGIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKLP 660
Query: 504 KRFWGEALLTAVHLINR 520
+W ALL A+ +INR
Sbjct: 661 SSYWSYALLHAIFIINR 677
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 24/202 (11%)
Query: 322 LWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLD 381
+WH RLGH+S + ++ + H S + K +A + +
Sbjct: 540 IWHFRLGHLSNQRLSMM------------HSLYSSITIDNKAYSIA---------SSKFE 578
Query: 382 LVHSDLCGPLTM-SYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGK 440
L+H D+ GPL++ S G++YF+T +DD SR WV LK+K +V + K F+ L+
Sbjct: 579 LLHFDIWGPLSVTSVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQI 638
Query: 441 KLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHA 500
+ I++DNG E+ P F GI HQ + +TPQ NG ER ++ ++ R LL +
Sbjct: 639 TPKYIRSDNGPEFLIP--EFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQS 696
Query: 501 KLFKRFWGEALLTAVHLINRSP 522
KL FW A++ AV LIN+ P
Sbjct: 697 KLPNFFWSYAVIHAVFLINKVP 718
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 389 GPLTM-SYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGKKLRCIKT 447
GPL++ S G+RYF+T +DDH+R WV LK+K +V K F+ +++ + I+T
Sbjct: 523 GPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFIRT 582
Query: 448 DNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHAKLFKRFW 507
DNG E+ P +F HGI HQ + +TPQ NG ER ++ ++ R LL +KL FW
Sbjct: 583 DNGPEFMLP--SFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSFW 640
Query: 508 GEALLTAVHLINRSPCVPLI 527
A+ AV LINR P PL+
Sbjct: 641 SYAIHHAVFLINRVP-TPLL 659
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 4/167 (2%)
Query: 355 CSDCMARKQNRVAFKISQPSKMKNVLDLVHSDLCGPLTM-SYGGNRYFVTFIDDHSRKTW 413
C C + ++ F S L+H D+ GPL + S G++YF+T +DDH+R W
Sbjct: 16 CDVCHFARHKKLPFSHSSSHASSK-FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLW 74
Query: 414 VYTLKSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPP 473
+ LK+K +V K F+ ++E Q + I+TDNG E+ F GI HQ++
Sbjct: 75 IILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEFL--LHEFYASKGILHQSSCV 132
Query: 474 KTPQLNGLAERMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINR 520
+TPQ NG ER ++ ++ R LL +KL FW A L AV LINR
Sbjct: 133 ETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINR 179
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 359 MARKQNRVAFKISQPSKMKNVLDLVHSDLCGPL-TMSYGGNRYFVTFIDDHSRKTWVYTL 417
MAR Q+R+ F + + +L+H D+ GP T ++ +YF+T +DD S+ TW L
Sbjct: 1 MAR-QSRLPFP-PKTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLL 58
Query: 418 KSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYTG-PFDAFCKXHGIRHQTTPPKTP 476
K V K F+ +VE Q ++ I++DNG E+T F + GI HQ + P TP
Sbjct: 59 SCKSNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTP 118
Query: 477 QLNGLAERMNRTLMERVRCLLSHAKLFKRFWGE 509
Q NG+ ER ++ ++E R LL +KL ++W E
Sbjct: 119 QQNGVVERKHKFILETARALLFQSKLPVKYWSE 151
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 313 VAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQ 372
+ E VELWHKRL HM EK M L K+N+LS + HL+KC C+ K+++V+F+
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHS 60
Query: 373 PSKMKNVLDLVHSDLCGPL-TMSYGGNRYFVTFIDDH 408
P K +LDLVH L GP+ T + GG+ YF++FIDDH
Sbjct: 61 P-KRPTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 313 VAEDDSAVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQ 372
+ E VELWHKRL HM EK M L K+N+LS + HL+KC C+ K+++V+F+
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHS 60
Query: 373 PSKMKNVLDLVHSDLCGPL-TMSYGGNRYFVTFIDDH 408
P K +LDLVH L GP+ T + GG+ YF++FIDDH
Sbjct: 61 P-KRPTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 319 AVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEK---CSDCMARKQNRVAFKISQPSK 375
+ LWH RLGH+S + ++ M +H++ C C KQ ++ + S
Sbjct: 441 STALWHFRLGHLSNQRLS-----QMHHLYPDIHVDNKFICDICHFAKQRKLPYNSSTSIA 495
Query: 376 MKNVLDLVHSDLCGPLT-MSYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLV 434
N +L++ D+ GPL +S G RYF+T +DDHSR W K+K +V + F+ L+
Sbjct: 496 SSN-FELLYLDIWGPLAKVSIHGQRYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYLI 554
Query: 435 ERQTGKKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNG-LAERMNRTLME 491
+ + + I++DNG + AF GI HQ + +TPQ N L R+ ++E
Sbjct: 555 QNKHKVTPKIIRSDNGHVFL--LSAFYASQGIIHQRSCVETPQHNVFLINRVPTLVLE 610
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 417 LKSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYT-GPFDAFCKXHGIRHQTTPPKT 475
+K + FKQ L+E Q GKK++ ++ DNG E+ F+ FCK GI T
Sbjct: 1 MKHRSDASKNFKQLNALLENQFGKKVKRLQIDNGLEFCWSEFNEFCKTEGISRHHMVRNT 60
Query: 476 PQLNGLAERMNRTLMERVRCLLSHAKLFKRFWGEA 510
PQ N +A+RMN+TL+ER RC+LS+A L + FWGE
Sbjct: 61 PQQNSVAKRMNQTLLERARCMLSNAGLTRTFWGET 95
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 39/201 (19%)
Query: 322 LWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMARKQNRVAFKISQPSKMKNVLD 381
LWH RLGH+S++ + TL ++L K+ K + D
Sbjct: 535 LWHFRLGHLSKQRLQTL---SLLYPSIKI------------------------DNKAICD 567
Query: 382 LVHSDLCGPLTMSYGGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGKK 441
L H + +++ +DHSR W+ LK+K +V K F+ +++
Sbjct: 568 LCH----------FAKHKHLPFTSNDHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTT 617
Query: 442 LRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHAK 501
+ I+TDNG E+ HGI HQ + +TPQ NG ER ++ ++ R LL +K
Sbjct: 618 PKFIRTDNGPEFM--LSTLYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSK 675
Query: 502 LFKRFWGEALLTAVHLINRSP 522
L +W A+ AV LINR P
Sbjct: 676 LPPAYWCYAIQHAVFLINRVP 696
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 13/170 (7%)
Query: 254 VPDMHSNLISVGRLDAENFCSAFRNGQWKLT-----KGSMVVANGRKDPKLYVMHAKLAR 308
V D H++ V LD+ G+W LT G++V+A K LY +
Sbjct: 26 VVDGHTHYTDVWVLDSGASYHICPRGEWFLTYEQLDGGNIVMAASVKRGTLYFLQGTTLT 85
Query: 309 DTLNVA----EDDSAVELWHKRLGHMSEKGMTTLVKNNMLSGLDKVHLEKCSDCMA-RKQ 363
D VA + + +LWH RLGHMSE+GM L K+N+L G K+ S+ A K+
Sbjct: 86 DYGVVASFEIDQEDMTKLWHMRLGHMSERGMQILAKDNLLYG-HKIKDPGLSEHYAFGKR 144
Query: 364 NRVAFKISQPSKMKNVLDLVHSDLCGPLTM-SYGGNRYFVTFIDDHSRKT 412
+R F + + K LD +H D P + S GG++YF++ IDD+SR T
Sbjct: 145 HRNKF-LKVIHRTKGTLDYIHDDCWEPSRVESLGGHKYFLSLIDDYSRMT 193
>IMGA|Medtr4g019480.1 Integrase, catalytic region
chr04_pseudomolecule_IMGAG_V3 3983257-3980975 H
EGN_Mt090430 20090702
Length = 102
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 360 ARKQNRVAFKISQPSKMKNVLDLVHSDLCGPLTMSYGGNRYFVTFIDDHSRKTWVYTLKS 419
A + V+F S P K N+LDLVHSD+C + S G YFVTFIDDHSRK + +KS
Sbjct: 26 AEEGTLVSFHESSPHKRPNLLDLVHSDICMMDSKSIDGASYFVTFIDDHSRKVQTFVMKS 85
Query: 420 KDQVLDVFKQFL 431
K QV +F Q +
Sbjct: 86 KGQVPCIFMQVI 97
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 396 GGNRYFVTFIDDHSRKTWVYTLKSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEY-T 454
GG RYFV FIDD+S TW+Y +K++ ++ ++ F +++ Q K ++ + DN EY
Sbjct: 2 GGARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEYRD 61
Query: 455 GPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHA 500
+F G + + P T Q G AER +R +++ V +L A
Sbjct: 62 SKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISA 107
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 433 LVERQTGKKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMER 492
++E Q + I+TDNG E+ F GI HQ + +TPQ NG ER ++ ++
Sbjct: 1 MIENQFHVTPKIIRTDNGSEFL--LHEFYASKGILHQRSCVETPQQNGRVERKHQHILNI 58
Query: 493 VRCLLSHAKLFKRFWGEALLTAVHLINRSP 522
R LL +KL FW A L AV LINR P
Sbjct: 59 GRALLYQSKLPLSFWSYAFLHAVFLINRIP 88
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 475 TPQLNGLAERMNRTLMERVRCLLSHAKLFKRFWGEALLTAVHLINRSP 522
TPQ NG+AERMN+TL+E+ R +LS+ L + FW EA+ T +L+NR P
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGP 52
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 443 RCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQLNGLAERMNRTLMERVRCLLSHAKL 502
+ I+ DNG E+ F HGI H + +TPQ NG ER ++ ++ VR LL +KL
Sbjct: 459 KTIRIDNGPEFM--LKDFYASHGIIHHKSCVETPQQNGRVERKHQHILNVVRALLFQSKL 516
Query: 503 FKRFWGEALLTAVHLINR 520
FW A+L AV LINR
Sbjct: 517 PPTFWSYAVLHAVFLINR 534
>IMGA|Medtr3g169320.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 44131380-44131084 H
EGN_Mt090430 20090702
Length = 98
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 418 KSKDQVLDVFKQFLNLVERQTGKKLRCIKTDNGGEYTGPFDAFCKXHGIRHQTTPPKTPQ 477
K+K +V + F+ +E Q K++ ++TDNG E+ P F GI HQT+ +TPQ
Sbjct: 4 KTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMP--DFYSSKGIEHQTSCVETPQ 61
Query: 478 LNGLAERMNRTLMERVRCLLSHAKLFKRF 506
NG ER ++ ++ R +L +K F
Sbjct: 62 QNGRVERKHQHILNVARAMLFQSKFMVLF 90