Jatropha Genome Database

JcCA0139601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139601.20 + phase: 0 /TE/partial
         (257 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu...   127   6e-30
IMGA|Medtr4g110620.1 polyprotein-like, related chr04_pseudomolec...   122   1e-28
IMGA|Medtr6g036460.1 hypothetical protein chr06_pseudomolecule_I...   104   5e-23
IMGA|Medtr6g036320.1 hypothetical protein chr06_pseudomolecule_I...   104   5e-23
IMGA|Medtr2g100740.1 hypothetical protein chr02_pseudomolecule_I...    82   3e-16
IMGA|Medtr2g100470.1 hypothetical protein chr02_pseudomolecule_I...    82   3e-16

>IMGA|Medtr5g089840.1 copia LTR rider, related
           chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
           EGN_Mt090430 20090702
          Length = 154

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 19/170 (11%)

Query: 64  EEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHM 123
           ++W+ELD++AAS I                            YQ K ISNRL LKEQFH 
Sbjct: 4   DKWKELDLRAASAI-----------------PKELWEKLEGLYQAKGISNRLLLKEQFHN 46

Query: 124 LKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKE 183
           L+M EGTK+SDHLS LN+IVSELE++ V+ +DEDK LR+ILSLP +Y H+KPVL YG + 
Sbjct: 47  LRMDEGTKISDHLSTLNNIVSELESIEVKIDDEDKTLRIILSLPPSYVHLKPVLMYGKES 106

Query: 184 VVYADVISKLITEERRLNEMKNKSYEDSALSVGTXXXXXXXXXXXVVCWD 233
           + + +V +K+I+EE  +    ++S   S L + +             CW+
Sbjct: 107 LSFEEVATKIISEEMTMK--SDESTSSSMLLIRSGANGKKIHAKDFSCWN 154


>IMGA|Medtr4g110620.1 polyprotein-like, related
           chr04_pseudomolecule_IMGAG_V3 25158785-25159321 H
           EGN_Mt090430 20090702
          Length = 178

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 98/178 (55%), Gaps = 7/178 (3%)

Query: 64  EEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHM 123
           ++WEELD++ AS I +C                         YQ K ISN+L+ KE+FH 
Sbjct: 4   DKWEELDLRTASVILLCLPKNLPANVQNLRSAKEFCKKLEGLYQAKKISNQLFPKEKFHN 63

Query: 124 LKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKE 183
           L M EGTK+ +HL  LNDI+ ELE++ V+  DEDKAL LILSLP  Y H+K VL YG + 
Sbjct: 64  LHMDEGTKIFNHLCTLNDIIFELESIKVKIYDEDKALSLILSLPPFYVHLKLVLMYGKES 123

Query: 184 VVYADVIS--KLITEERRLNEMKNKSYEDSALSVGTXXXX--XXXXXXXVVCWDCGQT 237
           + + +V +  K+I+EERR   MK+     S+L + T             + CW CG +
Sbjct: 124 LSFEEVATKIKIISEERR---MKSDESTSSSLMLLTKSGANGKRIGAKNMACWKCGMS 178


>IMGA|Medtr6g036460.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 8068482-8067914 H
           EGN_Mt090430 20090702
          Length = 155

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 18/137 (13%)

Query: 64  EEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHM 123
           ++WEELD++A S IR+C                         YQ K+ISNRL LKEQFH 
Sbjct: 4   DKWEELDLRAVSAIRLCLAKNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQFHN 63

Query: 124 LKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKE 183
           L+M E                  E++ V+ +DEDKALR ILSLP +Y H+KPV  YG + 
Sbjct: 64  LRMDE------------------ESIEVKIDDEDKALRFILSLPPSYVHLKPVFMYGKES 105

Query: 184 VVYADVISKLITEERRL 200
           + + +V +K+I EERR+
Sbjct: 106 LSFEEVATKIIYEERRM 122


>IMGA|Medtr6g036320.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 7989980-7989412 H
           EGN_Mt090430 20090702
          Length = 155

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 18/137 (13%)

Query: 64  EEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHM 123
           ++WEELD++A S IR+C                         YQ K+ISNRL LKEQFH 
Sbjct: 4   DKWEELDLRAVSAIRLCLAKNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQFHN 63

Query: 124 LKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKE 183
           L+M E                  E++ V+ +DEDKALR ILSLP +Y H+KPV  YG + 
Sbjct: 64  LRMDE------------------ESIEVKIDDEDKALRFILSLPPSYVHLKPVFMYGKES 105

Query: 184 VVYADVISKLITEERRL 200
           + + +V +K+I EERR+
Sbjct: 106 LSFEEVATKIIYEERRM 122


>IMGA|Medtr2g100740.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 23540921-23533162 H
           EGN_Mt090430 20090702
          Length = 96

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 30/123 (24%)

Query: 64  EEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHM 123
           ++WEELD++AAS I +C                              +   +   EQFH 
Sbjct: 4   DKWEELDLRAASAICLC------------------------------LEKNVLANEQFHN 33

Query: 124 LKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKE 183
           L+M EGTK+SD+LS LN+IVSELE++ V  +DEDK LR I SLP  Y + K VL +  + 
Sbjct: 34  LRMDEGTKISDNLSTLNNIVSELESIEVMIDDEDKVLRRIFSLPPFYVYHKLVLMFEKER 93

Query: 184 VVY 186
           + +
Sbjct: 94  LSF 96


>IMGA|Medtr2g100470.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 23413375-23412996 H
           EGN_Mt090430 20090702
          Length = 96

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 30/123 (24%)

Query: 64  EEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXXXXXYQGKNISNRLYLKEQFHM 123
           ++WEELD++AAS I +C                              +   +   EQFH 
Sbjct: 4   DKWEELDLRAASAICLC------------------------------LEKNVLANEQFHN 33

Query: 124 LKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKE 183
           L+M EGTK+SD+LS LN+IVSELE++ V  +DEDK LR I SLP  Y + K VL +  + 
Sbjct: 34  LRMDEGTKISDNLSTLNNIVSELESIEVMIDDEDKVLRRIFSLPPFYVYHKLVLMFEKER 93

Query: 184 VVY 186
           + +
Sbjct: 94  LSF 96