Jatropha Genome Database

JcCA0139031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139031.10 - phase: 0 /partial
         (278 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g032930.1 Polyprenyl synthetase chr02_pseudomolecule_...   422   e-118

>IMGA|Medtr2g032930.1 Polyprenyl synthetase
           chr02_pseudomolecule_IMGAG_V3 8852627-8857120 E
           EGN_Mt090430 20090702
          Length = 342

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/276 (70%), Positives = 235/276 (85%)

Query: 1   MSDLKSKFLEVYSTLKSQLLNDPAFEFTDDSRQWLDRMLDYNVPRGKLYRGLAVIDCYKS 60
           M+DLKS FL VYS LKS+LL+DPAFE+++DSRQW+DRMLDYNVP GKL RGL+VID Y+ 
Sbjct: 1   MADLKSTFLNVYSVLKSELLHDPAFEWSEDSRQWVDRMLDYNVPGGKLNRGLSVIDSYRL 60

Query: 61  LKEGKELTNDEMLLACVLGWCIEWLQACAVVLDDIMDNSHTRRGQPCWYMLPKVGFIAIN 120
           LKEG+ L +DE+  A  LGWCIEWLQA  +VLDDIMDNSHTRRGQPCWY +PKVG IA N
Sbjct: 61  LKEGQALNDDEIFQASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRVPKVGMIAAN 120

Query: 121 DGIILPNQVRRILKMYFREKPYYVHLLELFHEVEFQSVCGEMIDLISTHKGEQDLSNYSL 180
           DG++L N + RIL+ +F+ KPYYV LL+LF+EVEFQ+  G+MIDLI+T +GE+DLS Y+L
Sbjct: 121 DGVLLRNHIPRILRKHFKGKPYYVELLDLFNEVEFQTAAGQMIDLITTLEGEKDLSKYTL 180

Query: 181 SLYHRIVEYKSAYYSIYLPVACSLLMAGENLESHAEAKKILIEITIYFQVQDDYQDCFGD 240
           SL+ RIV+YK+AYYS YLPVAC+LLMAGENL++H + K IL+E+  YFQVQDDY DCFGD
Sbjct: 181 SLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHVDVKNILVEMGTYFQVQDDYLDCFGD 240

Query: 241 PEITGKVGTDIEDCKCTWFVVKALELANEEQKKLLY 276
           PE  GK+GTDIED KC+W VVKALEL NEEQKK+L+
Sbjct: 241 PETIGKIGTDIEDFKCSWVVVKALELCNEEQKKVLH 276