Jatropha Genome Database

JcCA0138571.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138571.20 - phase: 0 
         (376 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235758_14.1 Arabidopsis retrotransposon ORF-1 protein AC2...   129   3e-30
IMGA|Medtr5g068920.1 Arabidopsis retrotransposon ORF-1 protein c...   128   5e-30
IMGA|Medtr6g067290.1 hypothetical protein chr06_pseudomolecule_I...    58   8e-09

>IMGA|AC235758_14.1 Arabidopsis retrotransposon ORF-1 protein
           AC235758.1 80036-78846 H EGN_Mt090430 20090702
          Length = 396

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 131/254 (51%), Gaps = 14/254 (5%)

Query: 45  QQERYTKLSLRPILPNRFIDEAALAQVGLRDIVLDPLKRIGWGEFIDMKDLVYAPLTLEF 104
           + ERY  L+ R I+ NR+ D AAL  +G+ D V   +  IGW +F+      +   TLEF
Sbjct: 34  EMERYKMLANRDIVSNRYPDSAALQALGIEDNVTTLISNIGWKDFVGETHFTFETRTLEF 93

Query: 105 LSSYRAFIPLLPN--SPPSRVNFRLLSQDFELTVNEISHIFGFPTDNSQIQISSDFSARN 162
           LS+ + F     N  +P   V+F L + ++ +++ E S + GF +    I +S +  AR 
Sbjct: 94  LSTVK-FSHDTNNVTNPNHTVSFSLGNVEYYMSLTEFSDLMGFES-TGVIHVSRNHDARR 151

Query: 163 T-------WKNLTGEVNYNPRYSKASKLKKPSLRYIHKFLSNSIFGRSESDGVLSLNELY 215
                   W  +TG  +Y  + +KAS ++ P  RY+H+ ++ +IFGR E+  V S +EL+
Sbjct: 152 RGYDKHGFWFQITGRKHYECKTAKASMIQNPVFRYLHRVMACTIFGRPETATVRS-DELF 210

Query: 216 FLWAIENGVLLNVGYWLCQKFGKVAGADKGAIMVGCFVTRIARYLQVWNPARPIYDSIGG 275
            LWA+ +   +N GY+L      VA   KG I+ G  V+ IA  L   +  + I   I G
Sbjct: 211 LLWAMVHKCPVNTGYYLLDHLAYVAEQPKGKIVAGGLVSFIAWKLGARSATQEI--GIDG 268

Query: 276 GRSTRLDLDVMIHM 289
             +  +D    IHM
Sbjct: 269 NDTIDIDFCKQIHM 282


>IMGA|Medtr5g068920.1 Arabidopsis retrotransposon ORF-1 protein
           chr05_pseudomolecule_IMGAG_V3 24809489-24810562 H
           EGN_Mt090430 20090702
          Length = 357

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 12/253 (4%)

Query: 45  QQERYTKLSLRPILPNRFIDEAALAQVGLRDIVLDPLKRIGWGEFIDMKDLVYAPLTLEF 104
           ++ERY  L  R I+PNR+ D AAL  +G+ D V   +  IGW +F+      +   T EF
Sbjct: 34  ERERYKMLLNRDIVPNRYPDSAALQALGIDDNVTTLISNIGWKDFMGETHFTFETSTFEF 93

Query: 105 LSSYRAFIPLLPNSPPSR-VNFRLLSQDFELTVNEISHIFGFPTDNSQIQISSDFSARNT 163
           LS+          + P+  V+F L + ++ +++ E S I GF +    I +S +  AR+ 
Sbjct: 94  LSTVNFNHDTHNTTHPNHTVSFSLGNVEYNMSLTEFSDIMGFES-TGVIHVSRNHDARHR 152

Query: 164 -------WKNLTGEVNYNPRYSKASKLKKPSLRYIHKFLSNSIFGRSESDGVLSLNELYF 216
                  W  +TG   Y  + +KAS ++ P  RY+H+ ++ +IFGR E+  V S +EL+ 
Sbjct: 153 GYDKHGFWFQITGRKRYECKTAKASMIQNPVFRYLHRVMACTIFGRPETATVRS-DELFL 211

Query: 217 LWAIENGVLLNVGYWLCQKFGKVAGADKGAIMVGCFVTRIARYLQVWNPARPIYDSIGGG 276
           LWA+ +   +N GY+L      VA   KG I+ G  V+ IA  L   +    I   I G 
Sbjct: 212 LWAMVHKCPVNTGYYLLDHLTYVAEQPKGKIVAGGLVSFIAWKLGARSATHEI--GIDGN 269

Query: 277 RSTRLDLDVMIHM 289
            +  +D    IHM
Sbjct: 270 YTIDIDFCKQIHM 282


>IMGA|Medtr6g067290.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 12457035-12455833 H
           EGN_Mt090430 20090702
          Length = 342

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 45  QQERYTKLSLRPILPNRFIDEAALAQVGLRDIVLDPLKRIGWGEFIDMKDLVYAPLTLEF 104
           ++ERY  L  R I+PNR+ D  AL  +G+ D V   +  IGW  F+      +   T EF
Sbjct: 34  ERERYKMLLNRDIVPNRYPDSTALQALGIDDNVTTLISNIGWKYFVGETHFTFETSTFEF 93

Query: 105 LSSYRAFIPLLPNSPPSR-VNFRLLSQDFELTVNEISHIFGFPTDNSQIQISSDFSA 160
           LS+          + P+  V+F   + ++ +++ E S I GF +    I +S +  A
Sbjct: 94  LSTVNFNHDTHNTTHPNHTVSFSFGNVEYNMSLTEFSDIMGFES-TGVIHVSRNHDA 149