Jatropha Genome Database

JcCA0138571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138571.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g123870.1 AAA ATPase VAT, N-terminal chr07_pseudomole...    52   9e-08

>IMGA|Medtr7g123870.1 AAA ATPase VAT, N-terminal
           chr07_pseudomolecule_IMGAG_V3 28920320-28924972 E
           EGN_Mt090430 20090702
          Length = 195

 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 21/24 (87%), Positives = 22/24 (91%)

Query: 92  FCFWAALTVPGKFRSIHPYSDENR 115
            CFWAALTVPGKF SIHP+SDENR
Sbjct: 171 LCFWAALTVPGKFLSIHPHSDENR 194